View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_42 (Length: 404)
Name: NF6867A_low_42
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 8700015 - 8699769
Alignment:
| Q |
11 |
ttattctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttactcgatnnnnnnnnn-gttttaaataag |
109 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||| ||| |||||||||||| |
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| T |
8700015 |
ttattctagaactattatggattaagtttgtaagcggttcaagcagctcttgaaattttattgcagtttttacttgataaaaaaaaaagttttaaataag |
8699916 |
T |
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| Q |
110 |
aattttctattctatcctagaatacttaatgagatggtgaggaatctcctacaagtcttgatttcaaatctagaagagttttgtgattcattgtgatgcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8699915 |
tattttctattctatcctagaatacttaatgagatggtgaggaatctcctagaggtcttgatttcaaatctagaagagttttgtaattcattgtgatgcc |
8699816 |
T |
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| Q |
210 |
ttacccgacttaaggaattagtctatacactttgcacaaagataccc |
256 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
8699815 |
ttacccgatttaaggaattagtttatacactttgcacagagataccc |
8699769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 14382896 - 14382932
Alignment:
| Q |
111 |
attttctattctatcctagaatacttaatgagatggt |
147 |
Q |
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|||||||||||||||||| ||||||||| |||||||| |
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| T |
14382896 |
attttctattctatcctaaaatacttaaagagatggt |
14382932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 52773604 - 52773531
Alignment:
| Q |
11 |
ttattctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttact |
84 |
Q |
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||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
52773604 |
ttattctagaactattacggactaactttgtaagcggttgaggcagctcctgaaattttattgcagtttttact |
52773531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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