View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_422 (Length: 228)

Name: NF6867A_low_422

Description: NF6867A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6867A_low_422

[»] chr6 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 133; E-Value: 3e-69

Query Start/End: Original strand, 16 - 212

Target Start/End: Original strand, 16438208 - 16438403

Alignment:

Q	16	acatcaacacaaaaatggcagcgacagtggagattgatccaaatcgaaggtgacaaagagcagataaagaaagagaaacaaaacaaacccccaaaaatgg	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	16438208	acatcaacacaaaaatggcagcgactttggagatggatccaaatcgaaggtaacaaag-gtagacaaagaaagaaaaacaaaacaaaccctcaaaaatgg	16438306	T

Q	116	aatcaacccgcaaactcgtcatcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaactcccaacccaacaactccaa	212	Q
		\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	16438307	aaccaacccacaaactcctcatcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaacttctaacccaacaacaccaa	16438403	T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 136 - 197

Target Start/End: Original strand, 39041731 - 39041792

Alignment:

Q	136	atcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaactccca	197	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|
T	39041731	atcatcaccacaaccaaaattcaccaccacacacaagatcacaattaacattccaactccca	39041792	T

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