View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_428 (Length: 227)
Name: NF6867A_low_428
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_428 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 46240127 - 46239901
Alignment:
| Q |
1 |
acaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
46240127 |
acaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagca |
46240028 |
T |
|
| Q |
101 |
gcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgataccca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46240027 |
gcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttggtgataccca |
46239928 |
T |
|
| Q |
201 |
ctgcatgattcgtcctcatgtcatcca |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
46239927 |
ctgcatgattcgtcctcatgtcatcca |
46239901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 23541436 - 23541295
Alignment:
| Q |
86 |
cttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctac |
185 |
Q |
| |
|
||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
23541436 |
cttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctac |
23541337 |
T |
|
| Q |
186 |
ctttggtgatacccactgcatgattcgtcctcatgtcatcca |
227 |
Q |
| |
|
| | || |||||||||||||| || |||||||||||||||| |
|
|
| T |
23541336 |
ccattgtaatacccactgcatggtttgtcctcatgtcatcca |
23541295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 3437352 - 3437537
Alignment:
| Q |
1 |
acaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3437352 |
acaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagca |
3437451 |
T |
|
| Q |
101 |
gcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437452 |
gcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc |
3437537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 3437534 - 3437564
Alignment:
| Q |
195 |
tacccactgcatgattcgtcctcatgtcatc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3437534 |
tacccactgcatgattcgtcctcatgtcatc |
3437564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University