View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_43 (Length: 402)
Name: NF6867A_low_43
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 177 - 396
Target Start/End: Original strand, 27915071 - 27915288
Alignment:
| Q |
177 |
tagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattttc |
276 |
Q |
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| T |
27915071 |
tagtaacatatattttataattcaataaaacggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattattttc |
27915170 |
T |
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| Q |
277 |
cttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaaccagttaccgacatatactagtactcag |
376 |
Q |
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| T |
27915171 |
cttctggttgccattttcctcgatcttacaatattgtgggaacactgacaaagtgcaccatgaaccac--aaccatttaccgacatatgttagtactcag |
27915268 |
T |
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| Q |
377 |
atttttcttaataattttag |
396 |
Q |
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|||||||||||||||||||| |
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| T |
27915269 |
atttttcttaataattttag |
27915288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 27914658 - 27914817
Alignment:
| Q |
3 |
ctggatcgtgcgaagaatctagtatatatatctgcaagtggccaatcaagtactctttcatgcaagtatccatgaccaatgtattaattatttaagtacg |
102 |
Q |
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| T |
27914658 |
ctggatcgtgcgaagaatctagtatatatatctgcaagtagccaatcacgtactctttcttgcaagtttccatgaccaatgtattaattatttaagtacg |
27914757 |
T |
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| Q |
103 |
taatacgtatgttcttgtcctccgacccctactcaataaacagacaatgaaagtgtgttt |
162 |
Q |
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| T |
27914758 |
taatacgtatgttcttgtcctcagacccctactctctaaacagacaataaaagtgtgttt |
27914817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 175 - 351
Target Start/End: Original strand, 27909681 - 27909857
Alignment:
| Q |
175 |
actagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattt |
274 |
Q |
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| T |
27909681 |
actagtaacatatattttataattcaataaaatggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattatat |
27909780 |
T |
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| Q |
275 |
tccttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaacca |
351 |
Q |
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| T |
27909781 |
cccttctgattgccattttccttgatcttacaatatcgtgggaacacagacaaagtgcatcatgaaccacaaaacca |
27909857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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