View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_439 (Length: 226)
Name: NF6867A_low_439
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_439 |
 | |
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| [»] scaffold1171 (1 HSPs) |
| | |
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| [»] scaffold0250 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 9944166 - 9944384
Alignment:
| Q |
7 |
gagttatgttgagtcacattaagatttatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaatta |
106 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9944166 |
gagttatgttgagtcactttaagctttgtagggctaagaataaggcttcggaactgattcatggtggaatagatgagaaatattctcatcttagaaatta |
9944265 |
T |
|
| Q |
107 |
tgctgaggaattgatgaggagtaatccaggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaaggatatgaatgctttaa |
206 |
Q |
| |
|
|| ||||||||||||||||| |||| | ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
9944266 |
tgttgaggaattgatgaggattaattcgggtagcattgttaggattaaatgtgcagttggagatgcaggaccagtgtttgaaaggatatgtatgctttaa |
9944365 |
T |
|
| Q |
207 |
tgcatgcaagaggggattt |
225 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
9944366 |
tgcatgcaagagggcattt |
9944384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 19695118 - 19695224
Alignment:
| Q |
33 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
132 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| |||||||| |||||| | |||| |||| ||||||||||||||| ||||||| |||| |
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|
| T |
19695118 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgaacaatatgcatatctgtgaaactatgctgaggaattgttgaggagcaatc |
19695217 |
T |
|
| Q |
133 |
caggtag |
139 |
Q |
| |
|
| ||||| |
|
|
| T |
19695218 |
ctggtag |
19695224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 19705703 - 19705809
Alignment:
| Q |
33 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
132 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| |||||||| |||||| | |||| |||| ||||||||||||||| ||||||| |||| |
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|
| T |
19705703 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgaacaatatgcatatctgtgaaactatgctgaggaattgttgaggagcaatc |
19705802 |
T |
|
| Q |
133 |
caggtag |
139 |
Q |
| |
|
| ||||| |
|
|
| T |
19705803 |
ctggtag |
19705809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 29921739 - 29921634
Alignment:
| Q |
28 |
agatttatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggag |
127 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||| || ||||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |
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|
| T |
29921739 |
agatatatagggctaagaagaaggctttaaaacttatccatggtgcaatagatgagcaatatgctcatctcagaaattatgctgaagaattgatgaggag |
29921640 |
T |
|
| Q |
128 |
taatcc |
133 |
Q |
| |
|
|||||| |
|
|
| T |
29921639 |
taatcc |
29921634 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 3343510 - 3343410
Alignment:
| Q |
33 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
132 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||| |
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|
| T |
3343510 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgagcaatattcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
3343411 |
T |
|
| Q |
133 |
c |
133 |
Q |
| |
|
| |
|
|
| T |
3343410 |
c |
3343410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 26358571 - 26358625
Alignment:
| Q |
65 |
tcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg |
119 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
26358571 |
tcatggtgctatagatgagcaatatgctcatcttaagaattatgctgaggaattg |
26358625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1171 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1171
Description:
Target: scaffold1171; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 240 - 134
Alignment:
| Q |
33 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
132 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
240 |
tatagggctaagaagaaggctttagaacttatccatggtggcatagatgagcaatatgcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
141 |
T |
|
| Q |
133 |
caggtag |
139 |
Q |
| |
|
| ||||| |
|
|
| T |
140 |
ctggtag |
134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 25301 - 25201
Alignment:
| Q |
33 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
132 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
25301 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgagcaatattcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
25202 |
T |
|
| Q |
133 |
c |
133 |
Q |
| |
|
| |
|
|
| T |
25201 |
c |
25201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 17099120 - 17099220
Alignment:
| Q |
33 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
132 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
17099120 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgagcaatattcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
17099219 |
T |
|
| Q |
133 |
c |
133 |
Q |
| |
|
| |
|
|
| T |
17099220 |
c |
17099220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 20590472 - 20590372
Alignment:
| Q |
33 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
132 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
20590472 |
tatagggctaagaagaaggctttagaacttatccatggtggcatagatgagcaatatgcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
20590373 |
T |
|
| Q |
133 |
c |
133 |
Q |
| |
|
| |
|
|
| T |
20590372 |
c |
20590372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 271719 - 271654
Alignment:
| Q |
54 |
ttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg |
119 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
271719 |
ttggaaatgattcatggtgctatagatgagcaatatgctcatcttaggaattatgctgaggaattg |
271654 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 180543 - 180608
Alignment:
| Q |
54 |
ttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg |
119 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
180543 |
ttggaaatgattcatggtgctatagatgagcaatatgctcatcttaggaattatgctgaggaattg |
180608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 20895118 - 20895060
Alignment:
| Q |
61 |
tgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
20895118 |
tgattcatggtgctatagatgagcaatatgctcatcttaggaattatgctgaggaattg |
20895060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 11332735 - 11332578
Alignment:
| Q |
33 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
132 |
Q |
| |
|
|||||||||||||| |||| |||||| || || ||||||| ||||||||||||||| | ||| | ||| |||||||| ||||||| | |||||| ||| |
|
|
| T |
11332735 |
tatagggctaagaagaaggatttggagcttatacatggtgccatagatgagcaatatgcgcatatgagatattatgctaaggaatttaggaggagcaatt |
11332636 |
T |
|
| Q |
133 |
caggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaag |
190 |
Q |
| |
|
| |||||||||| | |||||| |||||| | || |||| ||| ||||| ||| |||| |
|
|
| T |
11332635 |
ctggtagcactgtgaagattaagtgtgcattaggtgatggaggaccagttttttaaag |
11332578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 14767073 - 14767173
Alignment:
| Q |
33 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
132 |
Q |
| |
|
|||||| ||||||| |||||||||||||| || ||||||| ||||||||||||||| ||| | | ||| |||||| |||||||| ||||||| |||| |
|
|
| T |
14767073 |
tataggactaagaagaaggctttggaacttatccatggtgccatagatgagcaatatgtgcatttgaaaaactatgctaaggaattgttgaggagcaatc |
14767172 |
T |
|
| Q |
133 |
c |
133 |
Q |
| |
|
| |
|
|
| T |
14767173 |
c |
14767173 |
T |
|
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