View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_44 (Length: 402)
Name: NF6867A_low_44
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 156 - 392
Target Start/End: Complemental strand, 37528053 - 37527818
Alignment:
| Q |
156 |
cttaattaattctgaaattaaaatcacacttaaggtttggaatgtgactggagtagacgagggccctggttggatgcaaatgggccacgctaggttgttg |
255 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37528053 |
cttaattaattctgaaattaaaatcacactta-gatttggaatgtgactggagtagacgagggccctggttggatgcaaatgggccacgctaggttgttg |
37527955 |
T |
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| Q |
256 |
tcaatagtccaatctgcttatttgtggaattactagtgtacctactgtatacaagttcgaatattaattataagactaattactatggtgtaagatgaat |
355 |
Q |
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| T |
37527954 |
tcaatagtccaatctgcttatttgtggaattactagtgtacctactgtatacaagttcgaatattaattatgagactaattactatggtgtaagacgaat |
37527855 |
T |
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| Q |
356 |
tattggagtggattcaaaatgtgaaattttgatgcat |
392 |
Q |
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|||| |||||||||||||||||||||| ||||||||| |
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| T |
37527854 |
tattagagtggattcaaaatgtgaaatattgatgcat |
37527818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 37528184 - 37528080
Alignment:
| Q |
32 |
tccatatttaatttattatgagtcnnnnnnngaatcattgaaaaacataannnnnnncccttttatgatattagtagttataaaaatagttttggaaaag |
131 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37528184 |
tccatatttaatttattatgagtcaaaaaaagaatcattgaaaaacataatttttttcccttttatgatattaatagttataaaaatagttttggaaaag |
37528085 |
T |
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| Q |
132 |
tgaca |
136 |
Q |
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||||| |
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| T |
37528084 |
tgaca |
37528080 |
T |
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