View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_443 (Length: 225)
Name: NF6867A_low_443
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_443 |
 |  |
|
| [»] scaffold0002 (1 HSPs) |
 |  |  |
|
| [»] scaffold0479 (1 HSPs) |
 |  |  |
|
| [»] scaffold0464 (1 HSPs) |
 |  |  |
|
| [»] scaffold0092 (1 HSPs) |
 |  |  |
|
| [»] scaffold0005 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 34064329 - 34064505
Alignment:
| Q |
21 |
accgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgca |
120 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||| |||||||| |
|
|
| T |
34064329 |
accgtcaccgggttatgcggcacgtgattaggggcgaagtaggacacatgtatggtgatccttgcgcgaaggcgcgctcctgtgtggtacg-tgtacgca |
34064427 |
T |
 |
| Q |
121 |
agatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccactgaccggtccataacatatattatt |
198 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34064428 |
agatggcgtgcttccttaagtgtggagtcttaaggaggtgtaagttcggccactgaccggtccataacatatattatt |
34064505 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 19730525 - 19730405
Alignment:
| Q |
44 |
gtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgt |
143 |
Q |
| |
|
|||||| ||||||||| |||| | |||||||||||| ||||||||||||| | ||| |||||| || |||| ||||||| |||| ||||||||||| || |
|
|
| T |
19730525 |
gtgatttggggcgaagcaggaaatatgtagggtgatacttgcgcgaaggcacactcctatgtgatatggtgcacgcaag-tggcatgctcccttaagtga |
19730427 |
T |
 |
| Q |
144 |
ggagtcttaaggtggtgtaagt |
165 |
Q |
| |
|
||||||| |||||||| |||| |
|
|
| T |
19730426 |
ggagtctcgaggtggtgcaagt |
19730405 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 19723457 - 19723361
Alignment:
| Q |
69 |
tgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagt |
165 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||| || |||| ||| | |||||||||| ||||| || |||||||| ||| ||||||||| |
|
|
| T |
19723457 |
tgtagggtgatccttgcttgaaggcgcgctcctgtgtggtatggtgcacgtgggctggcgtgctctcttaagtgcggagtcttgaggcggtgtaagt |
19723361 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 9403335 - 9403450
Alignment:
| Q |
50 |
aggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtc |
149 |
Q |
| |
|
|||| ||||| ||||||| ||||||||| |||||| | ||||||||||| | |||| | |||| ||||||| |||| || |||||||| ||| ||||| |
|
|
| T |
9403335 |
agggacgaagcaggacacgtgtagggtggtccttgtgtgaaggcgcgcttttgtgtggcatggtgcacgcaagctggcatgttcccttaagtgtagagtc |
9403434 |
T |
 |
| Q |
150 |
ttaaggtggtgtaagt |
165 |
Q |
| |
|
|| ||| |||| |||| |
|
|
| T |
9403435 |
ttgaggcggtgcaagt |
9403450 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 12449517 - 12449472
Alignment:
| Q |
44 |
gtgattaggggcgaagtaggacacatgtagggtgatccttgcgcga |
89 |
Q |
| |
|
||||||||||||| |||||| ||| | ||||||||||||||||||| |
|
|
| T |
12449517 |
gtgattaggggcggagtaggccacgtctagggtgatccttgcgcga |
12449472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 22865918 - 22866047
Alignment:
| Q |
44 |
gtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgt |
143 |
Q |
| |
|
|||||||||| || || | ||||| ||||||||||||||||||||||||||| ||| |||||| | ||| ||||||| |||||||||||||||| || |
|
|
| T |
22865918 |
gtgattagggacggagcatgacacgtgtagggtgatccttgcgcgaaggcgcactcttatgtggaatagtgcacgcaagctggcgtgctcccttaagtgc |
22866017 |
T |
 |
| Q |
144 |
ggagtcttaaggtggtgtaagtttggccac |
173 |
Q |
| |
|
|||||||| ||| |||| |||||||||||| |
|
|
| T |
22866018 |
ggagtcttgaggcggtgaaagtttggccac |
22866047 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 24546476 - 24546604
Alignment:
| Q |
21 |
accgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgca |
120 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||| || || | ||||| |||||||||||||||||||| ||| |||||| | |||| |||||| ||||| |
|
|
| T |
24546476 |
accgtctccgggttatgcggcgtgtgattagggacggagcaagacacgtgtagggtgatccttgcgcggaggtgcgctcctgtgtggcacggtgcacgca |
24546575 |
T |
 |
| Q |
121 |
agatggcgtgctcccttaaatgtggagtc |
149 |
Q |
| |
|
|| |||||||||||||||| || |||||| |
|
|
| T |
24546576 |
agttggcgtgctcccttaagtgcggagtc |
24546604 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 25828944 - 25828877
Alignment:
| Q |
22 |
ccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcga |
89 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||||||| | |||||||| ||||||| ||||||||||||| |
|
|
| T |
25828944 |
ccgtctccgggttatgcggcgtgtgattaggggcggaataggacacgtgtagggcgatccttgcgcga |
25828877 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 25537562 - 25537671
Alignment:
| Q |
44 |
gtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgt |
143 |
Q |
| |
|
|||||||||| |||| |||| || | |||||| |||||||||||| |||| |||| |||||| | ||||||||| | ||| |||||||||||| || |
|
|
| T |
25537562 |
gtgattagggacgaatcaggaaacgtatagggtaatccttgcgcgagggcgagctcctatgtggcatggtgtacgcgtgctggtgtgctcccttaagtgc |
25537661 |
T |
 |
| Q |
144 |
ggagtcttaa |
153 |
Q |
| |
|
|||||||||| |
|
|
| T |
25537662 |
ggagtcttaa |
25537671 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 13292080 - 13291929
Alignment:
| Q |
21 |
accgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgca |
120 |
Q |
| |
|
|||||| ||| ||||||||||| ||| |||||| || || | ||||| ||||||||||||||||||||||||||||||| | |||| ||||| ||||| |
|
|
| T |
13292080 |
accgtctccgggttatgcggcgtgtggttagggacggagcatgacacgtgtagggtgatccttgcgcgaaggcgcgctcctgtgtggcacggttcacgca |
13291981 |
T |
 |
| Q |
121 |
agatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggcca |
172 |
Q |
| |
|
|| ||||||||| ||||| ||| |||| ||| ||| |||| ||||| ||||| |
|
|
| T |
13291980 |
agctggcgtgcttccttagatgcggagccttgaggcggtgcaagttcggcca |
13291929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 16987037 - 16986897
Alignment:
| Q |
33 |
ttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgct |
132 |
Q |
| |
|
|||||||| | |||||||||| | || ||||||| || ||||||||||||| |||| ||| | ||| |||||| |||||| | || || ||||||||| |
|
|
| T |
16987037 |
ttatgcggtgtgtgattagggatggagcaggacacgtgcagggtgatccttgtgcgagggcacactcctatgtggcacggtgcatgcgagttggcgtgct |
16986938 |
T |
 |
| Q |
133 |
cccttaaatgtggagtcttaaggtggtgtaagtttggccac |
173 |
Q |
| |
|
|| | | | | |||| ||||||| |||| ||||||| |||| |
|
|
| T |
16986937 |
ccttcagacgcggagccttaaggcggtgcaagtttgaccac |
16986897 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 19290656 - 19290753
Alignment:
| Q |
77 |
gatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccact |
174 |
Q |
| |
|
|||||||||||| |||||||||| | |||| |||||| ||||||||| ||||||||| || ||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
19290656 |
gatccttgcgcggaggcgcgctcctgtgtggcacggtgcacgcaagattgcgtgctcctttgaatgtggagccttgaggtggtgtaagttaggccact |
19290753 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 15825296 - 15825359
Alignment:
| Q |
29 |
cgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaagg |
92 |
Q |
| |
|
|||||||||||||| ||| ||| || || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15825296 |
cgagttatgcggcgtgtgtttaaggacggagtaggacacatgtagggtgatccttgtgcgaagg |
15825359 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 19050381 - 19050248
Alignment:
| Q |
32 |
gttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgc |
131 |
Q |
| |
|
||||||||||| |||||||| | || |||||| |||||||||||| |||||| ||||||||||| | |||| || |||| |||| || | || ||| |
|
|
| T |
19050381 |
gttatgcggcgtatgattaggcatggagcaggacatgtgtagggtgatctttgcgcaaaggcgcgctcctgtgtggtatggtgcacgcgaggtcgcttgc |
19050282 |
T |
 |
| Q |
132 |
tcccttaaatgtggagtcttaaggtggtgtaagt |
165 |
Q |
| |
|
||||| || || |||||||||||| ||||||||| |
|
|
| T |
19050281 |
tccctaaagtgcggagtcttaaggcggtgtaagt |
19050248 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 29744035 - 29743947
Alignment:
| Q |
45 |
tgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctc |
133 |
Q |
| |
|
||||||||| || || ||||||| |||||||||||||| |||||| |||||||| |||| |||||| ||||||| |||||||||| |
|
|
| T |
29744035 |
tgattagggacggagcaggacacgtgtagggtgatcctagcgcgagagcgcgctcccgtgtggcacggtgcacgcaagctggcgtgctc |
29743947 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 18136019 - 18136078
Alignment:
| Q |
35 |
atgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcg |
94 |
Q |
| |
|
||||| || |||||||||| || | ||||||||||||||||||||||||||||| |||| |
|
|
| T |
18136019 |
atgcgacgtgtgattagggacggtgcaggacacatgtagggtgatccttgcgcgacggcg |
18136078 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 29138043 - 29138103
Alignment:
| Q |
28 |
ccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcg |
88 |
Q |
| |
|
||||||||||| ||| |||||||||| || ||||| |||| |||||||| ||||| ||||| |
|
|
| T |
29138043 |
ccgagttatgctgcgtgtgattagggacggagtagtacacgtgtagggtaatcctcgcgcg |
29138103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 379862 - 379963
Alignment:
| Q |
33 |
ttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgct |
132 |
Q |
| |
|
|||||||||| ||||||| || || || ||||||| |||||||||||||| | |||||||||||| | |||| |||||| ||||||| |||| |||| |
|
|
| T |
379862 |
ttatgcggcgtgtgattatggacggagcaggacacgtgtagggtgatcctcttgtgaaggcgcgctcctgtgtggcacggtgcacgcaagctggcatgct |
379961 |
T |
 |
| Q |
133 |
cc |
134 |
Q |
| |
|
|| |
|
|
| T |
379962 |
cc |
379963 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 23728765 - 23728661
Alignment:
| Q |
33 |
ttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgct |
132 |
Q |
| |
|
||||||||| |||||||||| | || ||||||| ||||||||||||||| || |||||||| ||| | |||| ||| || ||||||| ||| ||||| |
|
|
| T |
23728765 |
ttatgcggcatgtgattagggacagagcaggacacgtgtagggtgatccttccgtgaaggcgcactcctgtgtgacacgatgcacgcaagctggtgtgct |
23728666 |
T |
 |
| Q |
133 |
ccctt |
137 |
Q |
| |
|
||||| |
|
|
| T |
23728665 |
ccctt |
23728661 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 5184 - 5246
Alignment:
| Q |
33 |
ttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgc |
95 |
Q |
| |
|
|||||||||| |||||| ||| || ||||||||||||||| |||||| || |||||| ||||| |
|
|
| T |
5184 |
ttatgcggcgtgtgatttgggacggagtaggacacatgtaaggtgattctcgcgcgagggcgc |
5246 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 11657 - 11719
Alignment:
| Q |
32 |
gttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcg |
94 |
Q |
| |
|
||||||||||| |||||| ||| || ||||||||||||||| |||||| || |||||| |||| |
|
|
| T |
11657 |
gttatgcggcgtgtgatttgggacggagtaggacacatgtaaggtgattctcgcgcgagggcg |
11719 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 16012422 - 16012288
Alignment:
| Q |
28 |
ccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggc |
127 |
Q |
| |
|
||||||||||||||| |||||||| | || || || |||| ||||||||||||||| |||| |||||||| | || | |||||| || |||| |||| |
|
|
| T |
16012422 |
ccgagttatgcggcgtgtgattagtgacggagcagaacacgtgtagggtgatccttatgcgagagcgcgctcctgtgcggcacggtgcacacaagttggc |
16012323 |
T |
 |
| Q |
128 |
gtgctcccttaaatgtggagtcttaaggtggtgta |
162 |
Q |
| |
|
|| ||||||| || | |||||||||| |||||| |
|
|
| T |
16012322 |
atgttcccttaggtgcgaagtcttaaggcggtgta |
16012288 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 14601884 - 14601820
Alignment:
| Q |
109 |
acggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccac |
173 |
Q |
| |
|
|||||| ||||||| ||||||||||| || | || |||||| ||||| |||||||||| |||||| |
|
|
| T |
14601884 |
acggtgcacgcaagctggcgtgctcctttgagtgcggagtcgtaaggaggtgtaagttaggccac |
14601820 |
T |
 |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 12256969 - 12257039
Alignment:
| Q |
29 |
cgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctc |
99 |
Q |
| |
|
|||||||||||||| |||||||||| |||| | |||| ||||| |||| |||||||||| ||||||||| |
|
|
| T |
12256969 |
cgagttatgcggcgtgtgattagggacgaaacataacacgtgtagtgtgacccttgcgcgatggcgcgctc |
12257039 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 12731507 - 12731366
Alignment:
| Q |
32 |
gttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgc |
131 |
Q |
| |
|
||||||||||| |||||| ||| | ||||||||||||||| |||||| || |||||| ||||| ||| | |||| |||||| | | ||| || ||||| |
|
|
| T |
12731507 |
gttatgcggcgtgtgatttgggacagagtaggacacatgtaaggtgattctcgcgcgagggcgcactcctgtgtggcacggtgcatgtaagctgacgtgc |
12731408 |
T |
 |
| Q |
132 |
tcccttaaatgtggagtcttaaggtggtgtaagtttggccac |
173 |
Q |
| |
|
||| | ||| | |||| |||| | |||||| |||||||||| |
|
|
| T |
12731407 |
tccttcaaaagcggagctttaatgcggtgtatgtttggccac |
12731366 |
T |
 |
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Target: scaffold0092 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 21533 - 21441
Alignment:
| Q |
63 |
gacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaagg |
155 |
Q |
| |
|
||||| ||||| ||||||| |||| | ||||| |||||| |||| ||| || | ||||| |||||||||||||||| |||| || ||||||| |
|
|
| T |
21533 |
gacacgtgtagcgtgatccctgcgaggaggcgtgctcatgtgtggcacgatgcatgcaagttggcgtgctcccttaagtgtgtagccttaagg |
21441 |
T |
 |
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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 215494 - 215558
Alignment:
| Q |
109 |
acggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccac |
173 |
Q |
| |
|
|||||| ||||||| ||||||||||| || | || |||||| ||||| |||||||||| |||||| |
|
|
| T |
215494 |
acggtgcacgcaagctggcgtgctcctttgagtgcggagtcgtaaggaggtgtaagttaggccac |
215558 |
T |
 |
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