View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_443 (Length: 225)

Name: NF6867A_low_443
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_443
NF6867A_low_443
[»] chr6 (5 HSPs)
chr6 (21-198)||(34064329-34064505)
chr6 (44-165)||(19730405-19730525)
chr6 (69-165)||(19723361-19723457)
chr6 (50-165)||(9403335-9403450)
chr6 (44-89)||(12449472-12449517)
[»] chr5 (4 HSPs)
chr5 (44-173)||(22865918-22866047)
chr5 (21-149)||(24546476-24546604)
chr5 (22-89)||(25828877-25828944)
chr5 (44-153)||(25537562-25537671)
[»] chr7 (2 HSPs)
chr7 (21-172)||(13291929-13292080)
chr7 (33-173)||(16986897-16987037)
[»] chr2 (6 HSPs)
chr2 (77-174)||(19290656-19290753)
chr2 (29-92)||(15825296-15825359)
chr2 (32-165)||(19050248-19050381)
chr2 (45-133)||(29743947-29744035)
chr2 (35-94)||(18136019-18136078)
chr2 (28-88)||(29138043-29138103)
[»] scaffold0002 (1 HSPs)
scaffold0002 (33-134)||(379862-379963)
[»] chr1 (1 HSPs)
chr1 (33-137)||(23728661-23728765)
[»] scaffold0479 (1 HSPs)
scaffold0479 (33-95)||(5184-5246)
[»] scaffold0464 (1 HSPs)
scaffold0464 (32-94)||(11657-11719)
[»] chr4 (2 HSPs)
chr4 (28-162)||(16012288-16012422)
chr4 (109-173)||(14601820-14601884)
[»] chr3 (2 HSPs)
chr3 (29-99)||(12256969-12257039)
chr3 (32-173)||(12731366-12731507)
[»] scaffold0092 (1 HSPs)
scaffold0092 (63-155)||(21441-21533)
[»] scaffold0005 (1 HSPs)
scaffold0005 (109-173)||(215494-215558)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 34064329 - 34064505
Alignment:
21 accgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgca 120  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||| ||||||||    
34064329 accgtcaccgggttatgcggcacgtgattaggggcgaagtaggacacatgtatggtgatccttgcgcgaaggcgcgctcctgtgtggtacg-tgtacgca 34064427  T
121 agatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccactgaccggtccataacatatattatt 198  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
34064428 agatggcgtgcttccttaagtgtggagtcttaaggaggtgtaagttcggccactgaccggtccataacatatattatt 34064505  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 19730525 - 19730405
Alignment:
44 gtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgt 143  Q
    |||||| ||||||||| |||| | |||||||||||| ||||||||||||| | ||| |||||| || |||| ||||||| |||| ||||||||||| ||     
19730525 gtgatttggggcgaagcaggaaatatgtagggtgatacttgcgcgaaggcacactcctatgtgatatggtgcacgcaag-tggcatgctcccttaagtga 19730427  T
144 ggagtcttaaggtggtgtaagt 165  Q
    |||||||  |||||||| ||||    
19730426 ggagtctcgaggtggtgcaagt 19730405  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 19723457 - 19723361
Alignment:
69 tgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagt 165  Q
    |||||||||||||||||  |||||||||||| | |||| || |||| |||   | |||||||||| ||||| || |||||||| ||| |||||||||    
19723457 tgtagggtgatccttgcttgaaggcgcgctcctgtgtggtatggtgcacgtgggctggcgtgctctcttaagtgcggagtcttgaggcggtgtaagt 19723361  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 9403335 - 9403450
Alignment:
50 aggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtc 149  Q
    |||| ||||| ||||||| ||||||||| |||||| | |||||||||||  | ||||  | |||| ||||||| |||| || |||||||| ||| |||||    
9403335 agggacgaagcaggacacgtgtagggtggtccttgtgtgaaggcgcgcttttgtgtggcatggtgcacgcaagctggcatgttcccttaagtgtagagtc 9403434  T
150 ttaaggtggtgtaagt 165  Q
    || ||| |||| ||||    
9403435 ttgaggcggtgcaagt 9403450  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 12449517 - 12449472
Alignment:
44 gtgattaggggcgaagtaggacacatgtagggtgatccttgcgcga 89  Q
    ||||||||||||| |||||| ||| | |||||||||||||||||||    
12449517 gtgattaggggcggagtaggccacgtctagggtgatccttgcgcga 12449472  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 22865918 - 22866047
Alignment:
44 gtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgt 143  Q
    |||||||||| || || | ||||| ||||||||||||||||||||||||||| ||| ||||||  |  ||| ||||||| |||||||||||||||| ||     
22865918 gtgattagggacggagcatgacacgtgtagggtgatccttgcgcgaaggcgcactcttatgtggaatagtgcacgcaagctggcgtgctcccttaagtgc 22866017  T
144 ggagtcttaaggtggtgtaagtttggccac 173  Q
    |||||||| ||| |||| ||||||||||||    
22866018 ggagtcttgaggcggtgaaagtttggccac 22866047  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 24546476 - 24546604
Alignment:
21 accgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgca 120  Q
    |||||| ||| ||||||||||| |||||||||| || || | ||||| |||||||||||||||||||| ||| |||||| | ||||  |||||| |||||    
24546476 accgtctccgggttatgcggcgtgtgattagggacggagcaagacacgtgtagggtgatccttgcgcggaggtgcgctcctgtgtggcacggtgcacgca 24546575  T
121 agatggcgtgctcccttaaatgtggagtc 149  Q
    || |||||||||||||||| || ||||||    
24546576 agttggcgtgctcccttaagtgcggagtc 24546604  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 25828944 - 25828877
Alignment:
22 ccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcga 89  Q
    ||||| ||| ||||||||||| ||||||||||||| | |||||||| ||||||| |||||||||||||    
25828944 ccgtctccgggttatgcggcgtgtgattaggggcggaataggacacgtgtagggcgatccttgcgcga 25828877  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 25537562 - 25537671
Alignment:
44 gtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgt 143  Q
    |||||||||| ||||  |||| || | |||||| |||||||||||| |||| |||| ||||||  | |||||||||  | ||| |||||||||||| ||     
25537562 gtgattagggacgaatcaggaaacgtatagggtaatccttgcgcgagggcgagctcctatgtggcatggtgtacgcgtgctggtgtgctcccttaagtgc 25537661  T
144 ggagtcttaa 153  Q
    ||||||||||    
25537662 ggagtcttaa 25537671  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 13292080 - 13291929
Alignment:
21 accgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgca 120  Q
    |||||| ||| ||||||||||| ||| |||||| || || | ||||| ||||||||||||||||||||||||||||||| | ||||  |||||  |||||    
13292080 accgtctccgggttatgcggcgtgtggttagggacggagcatgacacgtgtagggtgatccttgcgcgaaggcgcgctcctgtgtggcacggttcacgca 13291981  T
121 agatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggcca 172  Q
    || ||||||||| ||||| ||| |||| ||| ||| |||| ||||| |||||    
13291980 agctggcgtgcttccttagatgcggagccttgaggcggtgcaagttcggcca 13291929  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 16987037 - 16986897
Alignment:
33 ttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgct 132  Q
    |||||||| | ||||||||||  | || ||||||| || ||||||||||||| |||| ||| | ||| ||||||  |||||| | || || |||||||||    
16987037 ttatgcggtgtgtgattagggatggagcaggacacgtgcagggtgatccttgtgcgagggcacactcctatgtggcacggtgcatgcgagttggcgtgct 16986938  T
133 cccttaaatgtggagtcttaaggtggtgtaagtttggccac 173  Q
    || | | | | |||| ||||||| |||| ||||||| ||||    
16986937 ccttcagacgcggagccttaaggcggtgcaagtttgaccac 16986897  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 19290656 - 19290753
Alignment:
77 gatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccact 174  Q
    |||||||||||| |||||||||| | ||||  |||||| ||||||||| ||||||||| || ||||||||| ||| |||||||||||||| |||||||    
19290656 gatccttgcgcggaggcgcgctcctgtgtggcacggtgcacgcaagattgcgtgctcctttgaatgtggagccttgaggtggtgtaagttaggccact 19290753  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 15825296 - 15825359
Alignment:
29 cgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaagg 92  Q
    |||||||||||||| ||| ||| || || ||||||||||||||||||||||||||| |||||||    
15825296 cgagttatgcggcgtgtgtttaaggacggagtaggacacatgtagggtgatccttgtgcgaagg 15825359  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 19050381 - 19050248
Alignment:
32 gttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgc 131  Q
    |||||||||||  ||||||||   | || ||||||  |||||||||||| |||||| ||||||||||| | |||| || |||| |||| || | || |||    
19050381 gttatgcggcgtatgattaggcatggagcaggacatgtgtagggtgatctttgcgcaaaggcgcgctcctgtgtggtatggtgcacgcgaggtcgcttgc 19050282  T
132 tcccttaaatgtggagtcttaaggtggtgtaagt 165  Q
    ||||| || || |||||||||||| |||||||||    
19050281 tccctaaagtgcggagtcttaaggcggtgtaagt 19050248  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 29744035 - 29743947
Alignment:
45 tgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctc 133  Q
    ||||||||| || || ||||||| |||||||||||||| ||||||  ||||||||   ||||  |||||| ||||||| ||||||||||    
29744035 tgattagggacggagcaggacacgtgtagggtgatcctagcgcgagagcgcgctcccgtgtggcacggtgcacgcaagctggcgtgctc 29743947  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 18136019 - 18136078
Alignment:
35 atgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcg 94  Q
    ||||| || |||||||||| ||  | ||||||||||||||||||||||||||||| ||||    
18136019 atgcgacgtgtgattagggacggtgcaggacacatgtagggtgatccttgcgcgacggcg 18136078  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 29138043 - 29138103
Alignment:
28 ccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcg 88  Q
    ||||||||||| ||| |||||||||| || ||||| |||| |||||||| ||||| |||||    
29138043 ccgagttatgctgcgtgtgattagggacggagtagtacacgtgtagggtaatcctcgcgcg 29138103  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 379862 - 379963
Alignment:
33 ttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgct 132  Q
    |||||||||| ||||||| || || || ||||||| ||||||||||||||   | |||||||||||| | ||||  |||||| ||||||| |||| ||||    
379862 ttatgcggcgtgtgattatggacggagcaggacacgtgtagggtgatcctcttgtgaaggcgcgctcctgtgtggcacggtgcacgcaagctggcatgct 379961  T
133 cc 134  Q
    ||    
379962 cc 379963  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 23728765 - 23728661
Alignment:
33 ttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgct 132  Q
    |||||||||  |||||||||| |  || ||||||| ||||||||||||||| || |||||||| ||| | ||||  ||| || ||||||| ||| |||||    
23728765 ttatgcggcatgtgattagggacagagcaggacacgtgtagggtgatccttccgtgaaggcgcactcctgtgtgacacgatgcacgcaagctggtgtgct 23728666  T
133 ccctt 137  Q
    |||||    
23728665 ccctt 23728661  T

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Target: scaffold0479 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 5184 - 5246
Alignment:
33 ttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgc 95  Q
    |||||||||| |||||| ||| || ||||||||||||||| |||||| || |||||| |||||    
5184 ttatgcggcgtgtgatttgggacggagtaggacacatgtaaggtgattctcgcgcgagggcgc 5246  T

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Target: scaffold0464 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 11657 - 11719
Alignment:
32 gttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcg 94  Q
    ||||||||||| |||||| ||| || ||||||||||||||| |||||| || |||||| ||||    
11657 gttatgcggcgtgtgatttgggacggagtaggacacatgtaaggtgattctcgcgcgagggcg 11719  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 16012422 - 16012288
Alignment:
28 ccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggc 127  Q
    ||||||||||||||| |||||||| | || || || |||| |||||||||||||||  ||||  |||||||| | || |  |||||| || |||| ||||    
16012422 ccgagttatgcggcgtgtgattagtgacggagcagaacacgtgtagggtgatccttatgcgagagcgcgctcctgtgcggcacggtgcacacaagttggc 16012323  T
128 gtgctcccttaaatgtggagtcttaaggtggtgta 162  Q
     || |||||||  || | |||||||||| ||||||    
16012322 atgttcccttaggtgcgaagtcttaaggcggtgta 16012288  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 14601884 - 14601820
Alignment:
109 acggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccac 173  Q
    |||||| ||||||| ||||||||||| || | || |||||| ||||| |||||||||| ||||||    
14601884 acggtgcacgcaagctggcgtgctcctttgagtgcggagtcgtaaggaggtgtaagttaggccac 14601820  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 12256969 - 12257039
Alignment:
29 cgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctc 99  Q
    |||||||||||||| |||||||||| ||||  |  |||| ||||| |||| |||||||||| |||||||||    
12256969 cgagttatgcggcgtgtgattagggacgaaacataacacgtgtagtgtgacccttgcgcgatggcgcgctc 12257039  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 12731507 - 12731366
Alignment:
32 gttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgc 131  Q
    ||||||||||| |||||| ||| |  ||||||||||||||| |||||| || |||||| ||||| ||| | ||||  |||||| | | ||| || |||||    
12731507 gttatgcggcgtgtgatttgggacagagtaggacacatgtaaggtgattctcgcgcgagggcgcactcctgtgtggcacggtgcatgtaagctgacgtgc 12731408  T
132 tcccttaaatgtggagtcttaaggtggtgtaagtttggccac 173  Q
    ||| | ||| | ||||  |||| | |||||| ||||||||||    
12731407 tccttcaaaagcggagctttaatgcggtgtatgtttggccac 12731366  T

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Target: scaffold0092 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 21533 - 21441
Alignment:
63 gacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaagg 155  Q
    ||||| ||||| ||||||| |||| | ||||| |||||| ||||  ||| || | ||||| |||||||||||||||| |||| || |||||||    
21533 gacacgtgtagcgtgatccctgcgaggaggcgtgctcatgtgtggcacgatgcatgcaagttggcgtgctcccttaagtgtgtagccttaagg 21441  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 215494 - 215558
Alignment:
109 acggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccac 173  Q
    |||||| ||||||| ||||||||||| || | || |||||| ||||| |||||||||| ||||||    
215494 acggtgcacgcaagctggcgtgctcctttgagtgcggagtcgtaaggaggtgtaagttaggccac 215558  T

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