View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_447 (Length: 224)

Name: NF6867A_low_447
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_447
NF6867A_low_447
[»] chr2 (2 HSPs)
chr2 (17-204)||(31340024-31340211)
chr2 (17-204)||(31333294-31333481)
[»] chr3 (2 HSPs)
chr3 (48-204)||(1656899-1657055)
chr3 (17-49)||(7405914-7405946)
[»] chr4 (2 HSPs)
chr4 (48-191)||(644504-644647)
chr4 (78-112)||(546594-546628)
[»] chr8 (2 HSPs)
chr8 (48-114)||(28246588-28246654)
chr8 (17-49)||(25640066-25640098)
[»] scaffold0576 (1 HSPs)
scaffold0576 (17-49)||(8394-8426)
[»] chr7 (1 HSPs)
chr7 (17-49)||(4683724-4683756)
[»] chr6 (3 HSPs)
chr6 (17-49)||(15363623-15363655)
chr6 (48-86)||(11936570-11936608)
chr6 (48-86)||(11948550-11948588)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 31340024 - 31340211
Alignment:
Q  17 aatatcacagttcatgaaaacttggatccaatgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340024 aatatcacagttcatgaaaacttggatccaatgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattact 31340123  T
Q  117 tttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340124 tttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtg 31340211  T

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Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 31333294 - 31333481
Alignment:
Q  17 aatatcacagttcatgaaaacttggatccaatgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31333294 aatatcacagttcatgaaaacttggatccaatgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattact 31333393  T
Q  117 tttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31333394 tttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgagcatgacaaatgaataagttattaagctattgattgtg 31333481  T

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Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 1657055 - 1656899
Alignment:
Q  48 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657055 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 1656956  T
Q  148 tgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtg 204  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1656955 tgctcatcatgttatgtgcgcatgacaaatgaataagttattaagctattgattgtg 1656899  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 7405914 - 7405946
Alignment:
Q  17 aatatcacagttcatgaaaacttggatccaatg 49  Q
    |||||||||||||||||||||||||||||||||    
T  7405914 aatatcacagttcatgaaaacttggatccaatg 7405946  T

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Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 644647 - 644504
Alignment:
Q  48 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 147  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  644647 tgctatgaagtttgaattgtgaatttctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtatata 644548  T
Q  148 tgctcatcatgttatgtgtgcatgacaaatgaataagttattaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  644547 tgctcatcatgttatgtgtgcatgacaaatgaataagttattaa 644504  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 546628 - 546594
Alignment:
Q  78 tgttttttgttttcagatttacttctatgagaaat 112  Q
    ||||| |||||||||||||||||||||||||||||    
T  546628 tgtttattgttttcagatttacttctatgagaaat 546594  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 28246588 - 28246654
Alignment:
Q  48 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaatta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246588 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaatta 28246654  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 25640098 - 25640066
Alignment:
Q  17 aatatcacagttcatgaaaacttggatccaatg 49  Q
    |||||||||||||||||||||||||||||||||    
T  25640098 aatatcacagttcatgaaaacttggatccaatg 25640066  T

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Target: scaffold0576 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 8426 - 8394
Alignment:
Q  17 aatatcacagttcatgaaaacttggatccaatg 49  Q
    |||||||||||||||||||||||||||||||||    
T  8426 aatatcacagttcatgaaaacttggatccaatg 8394  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 4683724 - 4683756
Alignment:
Q  17 aatatcacagttcatgaaaacttggatccaatg 49  Q
    |||||||||||||||||||||||||||||||||    
T  4683724 aatatcacagttcatgaaaacttggatccaatg 4683756  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 15363655 - 15363623
Alignment:
Q  17 aatatcacagttcatgaaaacttggatccaatg 49  Q
    |||||||||||||||||||||||||||||||||    
T  15363655 aatatcacagttcatgaaaacttggatccaatg 15363623  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 11936570 - 11936608
Alignment:
Q  48 tgctatgaagtttgaattgtgaatttataatgttttttg 86  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  11936570 tgctatgaagtttgaattgtgaatttataaagttgtttg 11936608  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 11948550 - 11948588
Alignment:
Q  48 tgctatgaagtttgaattgtgaatttataatgttttttg 86  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  11948550 tgctatgaagtttgaattgtgaatttataaagttgtttg 11948588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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