View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_448 (Length: 224)
Name: NF6867A_low_448
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_448 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 43706240 - 43706063
Alignment:
| Q |
15 |
catcaacaaactaaggtgatcgacaaatatattaatcgattggccagggttaggtgaatacaaatccctnnnnnnnnnnnnnnnnngtgttatttgattt |
114 |
Q |
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| T |
43706240 |
catcaacaaactaaggtgatcgacaaatatattaatcgattagccagggttaggtgaatacaaatccctatcatcatcatcat---gtgtcacttgattt |
43706144 |
T |
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| Q |
115 |
acggaaatgtatgtgcgcaacgcacataaccttatgtgtatcacgcatctctagtggcaaaacacttctgatttcatttca |
195 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43706143 |
acggaaatgtatgtgcgcaacacacataaccttatgtgcatcacgcatctctagtggcaaaacacttctgatttcatttca |
43706063 |
T |
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