View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_449 (Length: 224)

Name: NF6867A_low_449
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_449
NF6867A_low_449
[»] chr1 (12 HSPs)
chr1 (1-145)||(13244107-13244251)
chr1 (150-224)||(13244450-13244524)
chr1 (144-205)||(13080788-13080849)
chr1 (76-145)||(12963575-12963644)
chr1 (142-198)||(19279089-19279145)
chr1 (71-138)||(19278827-19278894)
chr1 (149-207)||(13094605-13094663)
chr1 (149-207)||(13130034-13130092)
chr1 (149-198)||(13161736-13161785)
chr1 (143-207)||(12963797-12963861)
chr1 (1-80)||(19278730-19278809)
chr1 (149-207)||(13101206-13101264)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  1 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttatt 100  Q
    |||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  101 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 145  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 13244450 - 13244524
Alignment:
Q  150 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcccctggcatttaagcaca 224  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcaca 13244524  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 13080788 - 13080849
Alignment:
Q  144 aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcct 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatcct 13080849  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  76 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 145  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 19279089 - 19279145
Alignment:
Q  142 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggct 198  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggct 19279145  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  71 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 138  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 13094663 - 13094605
Alignment:
Q  149 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcc 207  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcc 13094605  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 13130092 - 13130034
Alignment:
Q  149 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcc 207  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcc 13130034  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 13161785 - 13161736
Alignment:
Q  149 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggct 198  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggct 13161736  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 12963797 - 12963861
Alignment:
Q  143 aaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcc 207  Q
    |||| |||||||||||||||||| ||||||||||| || |||||| | |||||||| | ||||||    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcc 12963861  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19278730 - 19278809
Alignment:
Q  1 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 80  Q
    |||| |||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 13101264 - 13101206
Alignment:
Q  149 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcc 207  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| ||||| | ||||||    
T  13101264 cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcc 13101206  T

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