View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_459 (Length: 221)
Name: NF6867A_low_459
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_459 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 34444249 - 34444047
Alignment:
| Q |
19 |
atcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccatta |
118 |
Q |
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| T |
34444249 |
atcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccatta |
34444150 |
T |
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| Q |
119 |
aatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcgg |
218 |
Q |
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| T |
34444149 |
aatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcgg |
34444050 |
T |
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| Q |
219 |
aga |
221 |
Q |
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| T |
34444049 |
aga |
34444047 |
T |
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Target: chr6; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 34437498 - 34437308
Alignment:
| Q |
23 |
atttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatg |
122 |
Q |
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||||||||||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
34437498 |
atttttgaagaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccattaaatg |
34437399 |
T |
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| Q |
123 |
aaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaa |
213 |
Q |
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| T |
34437398 |
aaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagttccaa |
34437308 |
T |
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