View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_463 (Length: 221)
Name: NF6867A_low_463
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_463 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 44187481 - 44187268
Alignment:
| Q |
1 |
ggagattggtgttagagtagaaaattattgttgccaaatggtattttacaagaaaaaccttcttccgtttagagttgcagacaattaatttctttggtag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
44187481 |
ggagattggtgttagagtagaaaattattgttgccaaatggtagtttacaagaaaaaccttctttcgtttggagttgcagacaattaatttcttttgtag |
44187382 |
T |
|
| Q |
101 |
gctttgtgtggagttctcaccatcaaggtttatgagtctagttattaggatttaatatttgattacaaagttgaactttatgaagttacttatatgcaaa |
200 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
44187381 |
cctttgtgtggagttctcaccct-aaggcttatgagtctagttcttaggatttaatattagattgcaaagttgaactttatgaagttacttatatgccaa |
44187283 |
T |
|
| Q |
201 |
atggcttgtcagttg |
215 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
44187282 |
acgacttgtcagttg |
44187268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 19162988 - 19162856
Alignment:
| Q |
84 |
attaatttctttggtaggctttgtgtggagttctcaccatcaaggtttatgagtctagttattaggatttaatatttgatt-acaaagttgaactttatg |
182 |
Q |
| |
|
||||||| |||| ||| |||| |||| |||| ||||| ||||||||||||||||||||| ||||||||| ||||| ||| | |||||||||||| || |
|
|
| T |
19162988 |
attaattgcttttatagcctttttgtgaagttttcaccctcaaggtttatgagtctagttcttaggatttgatattctattgcctaagttgaactttctg |
19162889 |
T |
|
| Q |
183 |
aagttacttatatgcaaaatggcttgtcagttg |
215 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||| |
|
|
| T |
19162888 |
aagttgcttatatgcaaactggcttgttagttg |
19162856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 28867005 - 28866891
Alignment:
| Q |
45 |
tttacaagaaaaaccttcttccgtttagagttgcagacaattaatttctttggtaggctttgtgtggagttctcaccatcaaggtttatgagtctagtta |
144 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||| |||||||||||| || |||| |||||||||||||| | ||| |||||| ||| |||||||||| |
|
|
| T |
28867005 |
tttataagaaaaaccttcttccatttcgagttatagacaattaattgtatttgtagcctttgtgtggagtttttaccctcaagg-ttaggagtctagttc |
28866907 |
T |
|
| Q |
145 |
ttaggatttaatattt |
160 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
28866906 |
ttaggatttgatattt |
28866891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 28995192 - 28995306
Alignment:
| Q |
45 |
tttacaagaaaaaccttcttccgtttagagttgcagacaattaatttctttggtaggctttgtgtggagttctcaccatcaaggtttatgagtctagtta |
144 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||| |||||||||||| | || ||| ||||||||||| || ||||| |||||| | | |||||||||| |
|
|
| T |
28995192 |
tttacaagaaaaatcttcttccatttggagttatagacaattaattgcatttctagcctttgtgtggaattttcaccctcaagg-tcaggagtctagttc |
28995290 |
T |
|
| Q |
145 |
ttaggatttaatattt |
160 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
28995291 |
ttaggattttatattt |
28995306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University