View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_465 (Length: 220)

Name: NF6867A_low_465
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_465
NF6867A_low_465
[»] chr2 (11 HSPs)
chr2 (71-152)||(7542155-7542236)
chr2 (71-152)||(12245564-12245645)
chr2 (75-149)||(14703341-14703415)
chr2 (71-152)||(11999336-11999417)
chr2 (71-152)||(12234618-12234699)
chr2 (71-152)||(12258739-12258820)
chr2 (71-152)||(16657675-16657756)
chr2 (21-68)||(7542062-7542109)
chr2 (21-68)||(12234525-12234572)
chr2 (21-68)||(14703244-14703291)
chr2 (21-68)||(16662277-16662324)
[»] chr1 (2 HSPs)
chr1 (71-120)||(52549211-52549260)
chr1 (21-68)||(52549297-52549344)
[»] chr4 (3 HSPs)
chr4 (71-143)||(35132386-35132458)
chr4 (32-68)||(30775099-30775135)
chr4 (104-152)||(54396385-54396433)
[»] chr7 (3 HSPs)
chr7 (21-68)||(8616517-8616564)
chr7 (29-68)||(8659207-8659246)
chr7 (32-68)||(8585991-8586027)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 7542155 - 7542236
Alignment:
Q  71 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 152  Q
    |||||||||| ||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  7542155 aagaatctacctcaatagtggcaacaacaaggaaagaaagtgatctttttgccctctcacaagcagttctcaacctcctcaa 7542236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 12245645 - 12245564
Alignment:
Q  71 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 152  Q
    |||||||||| |||||||| || |||||||  || |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  12245645 aagaatctacctcaatagttgcaacaacaagaaacgaaagtattctttttgccctctcacaagcagttctcaatctcctcaa 12245564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 14703341 - 14703415
Alignment:
Q  75 atctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcct 149  Q
    |||||| |||||||||||||||||   |||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  14703341 atctacctcaatagtggcgacaacttggaaagaaagtgttctttttgccctctcgcaagcggttctcaagctcct 14703415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 11999336 - 11999417
Alignment:
Q  71 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 152  Q
    |||||||||| |||||||| || |||||||  || || ||| ||||||| ||||||||||||||||||||||| ||||||||    
T  11999336 aagaatctacctcaatagttgcaacaacaagaaatgatagtattctttttgccctctcacaagcagttctcaacctcctcaa 11999417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 12234618 - 12234699
Alignment:
Q  71 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 152  Q
    |||||||||| ||||| || || ||||||| |||||| | || |||||| |||||||||||||||||||| || ||||||||    
T  12234618 aagaatctacctcaatggttgcaacaacaaggaaagacaatgatctttttgccctctcacaagcagttcttaacctcctcaa 12234699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 12258820 - 12258739
Alignment:
Q  71 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 152  Q
    |||||||||  |||||||| || |||||||   ||||||||| |||||| || ||||||||||| ||| |||||||||||||    
T  12258820 aagaatctatctcaatagttgcaacaacaagataagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaa 12258739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 16657756 - 16657675
Alignment:
Q  71 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 152  Q
    |||||||||| |||| ||||| ||||| | | ||||| ||||| || || ||||||||||| ||||||||||| ||||||||    
T  16657756 aagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaa 16657675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 7542062 - 7542109
Alignment:
Q  21 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 68  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||||||    
T  7542062 caacaatcgtcatacactcgttaaaaagatccatattcatctcctcaa 7542109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 12234525 - 12234572
Alignment:
Q  21 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 68  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||    
T  12234525 caacaatcttcatacactcaataagaagatccatattcatttcctcaa 12234572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 14703244 - 14703291
Alignment:
Q  21 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 68  Q
    |||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  14703244 caacaatcttcacacactcattaaaaaagtccatattcatttcttcaa 14703291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 16662324 - 16662277
Alignment:
Q  21 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 68  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||| ||||    
T  16662324 caacaatcttcatacactcgttaaaaaggcccatattgatttcttcaa 16662277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 52549260 - 52549211
Alignment:
Q  71 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549260 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttg 52549211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 52549344 - 52549297
Alignment:
Q  21 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549344 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 52549297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 35132386 - 35132458
Alignment:
Q  71 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaa 143  Q
    ||||||||||||||||| |||| ||||||| ||||||||||| ||| || |||||||  || |||||||||||    
T  35132386 aagaatctacttcaatattggcaacaacaaggaaagaaagtgatctctttgccctctagcaggcagttctcaa 35132458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 30775099 - 30775135
Alignment:
Q  32 atacactccttaaaaaggtccatattcatttcctcaa 68  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  30775099 atacactcattaaaaaggtccatattgatttcctcaa 30775135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 54396385 - 54396433
Alignment:
Q  104 aagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 152  Q
    ||||||||||||| || || ||||||||||| ||||| |||||||||||    
T  54396385 aagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaa 54396433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 8616517 - 8616564
Alignment:
Q  21 caacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 68  Q
    ||||| |||| |||||||| ||||||||||||||||| ||||||||||    
T  8616517 caacagtctttatacactcgttaaaaaggtccatattgatttcctcaa 8616564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 8659207 - 8659246
Alignment:
Q  29 ttcatacactccttaaaaaggtccatattcatttcctcaa 68  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  8659207 ttcatacactcattaaaaagatccatattcatttcctcaa 8659246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 8586027 - 8585991
Alignment:
Q  32 atacactccttaaaaaggtccatattcatttcctcaa 68  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  8586027 atacactcattaaaaaggtccatattgatttcctcaa 8585991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University