View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_468 (Length: 220)
Name: NF6867A_low_468
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_468 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 19058 - 19276
Alignment:
| Q |
4 |
cattaatggctctcttgatgttcatt---tatattttctttgaaaacatttgtattttgtaataacttattgcataataactgtattgattatctattat |
100 |
Q |
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| T |
19058 |
cattaatggctctcttgatgtttattatttatattttctttgaaaacatttgtattttgtaataacttattgcataataactgtattgattttctattat |
19157 |
T |
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| Q |
101 |
aaacttgtttgtgtaaacacaagtgaaaatccccacatctttttgtagtttgagtacattttttgcatgaccattcgagtatgatnnnnnnntcttctgt |
200 |
Q |
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| T |
19158 |
aaacttgtttgtgtaaacgcaagtgaaaatccccacatctttttgtagtttgagtacattttttgcatgaccattcgagtatgat-agaaaatcttctgt |
19256 |
T |
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| Q |
201 |
agctgcacaaaattctctga |
220 |
Q |
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| T |
19257 |
agctgcacaaaattctctga |
19276 |
T |
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Target: scaffold0128; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 5643 - 5814
Alignment:
| Q |
4 |
cattaatggctctcttgatgttcatttatattttctttgaaaacatttgtattttgtaataacttattgcataataactgtattgattatctattataaa |
103 |
Q |
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|||||||| | ||||||||||| ||||| | |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| || || ||| |||| |
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| T |
5643 |
cattaatgtccctcttgatgtttatttagactttctttggaaacatttgtattttgtagtaacttattgcataataactgtgttgtttttcaattctaaa |
5742 |
T |
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| Q |
104 |
cttgtttgtgtaaacacaagtgaaaatccccacatctttttgtagtttgagtacattttttgcatgaccatt |
175 |
Q |
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| T |
5743 |
cctgtttgtgtaaaggcaggtggaaatccccacatctttgtttagtttgagtacaatttttacaggaccatt |
5814 |
T |
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