View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_469 (Length: 220)
Name: NF6867A_low_469
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_469 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 1414314 - 1414512
Alignment:
| Q |
15 |
tttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattcaga |
114 |
Q |
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| T |
1414314 |
tttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattcaga |
1414413 |
T |
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| Q |
115 |
tactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatgtccatctcat |
213 |
Q |
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| T |
1414414 |
tactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatggccgtctcat |
1414512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 1419863 - 1420058
Alignment:
| Q |
15 |
tttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattcaga |
114 |
Q |
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| T |
1419863 |
tttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagtcatgaatgtgtgtaccctgcaatttataactttggtgactcaaattcaga |
1419962 |
T |
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| Q |
115 |
tactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatgtccatctcat |
213 |
Q |
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| T |
1419963 |
tactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag---ctttggaaacatatcagggagagcttctgatggccgtctcat |
1420058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 67 - 213
Target Start/End: Original strand, 1410990 - 1411136
Alignment:
| Q |
67 |
caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata |
166 |
Q |
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| T |
1410990 |
caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaata |
1411089 |
T |
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| Q |
167 |
agcttctttggaaacatatcaggaagagcttctgatgtccatctcat |
213 |
Q |
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| T |
1411090 |
agcttctttggaaacatatcaggaagagcttctgatggccgtctcat |
1411136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 1408109 - 1408244
Alignment:
| Q |
68 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
167 |
Q |
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| T |
1408109 |
aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa |
1408208 |
T |
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| Q |
168 |
gcttctttggaaacatatcaggaagagcttctgatg |
203 |
Q |
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| T |
1408209 |
gctactttggaagcaccacaggaagagcttctgatg |
1408244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 1410914 - 1410965
Alignment:
| Q |
15 |
tttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga |
66 |
Q |
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| T |
1410914 |
tttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga |
1410965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
| Q |
68 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
167 |
Q |
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| T |
3600507 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa |
3600606 |
T |
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| Q |
168 |
gcttctttggaaacatatcaggaaga |
193 |
Q |
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| T |
3600607 |
gcttctttggaagcatctcaggaaga |
3600632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
| Q |
68 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
167 |
Q |
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| T |
14339374 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa |
14339473 |
T |
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| Q |
168 |
gcttctttggaaacatatcaggaaga |
193 |
Q |
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| T |
14339474 |
gcttctttggaagcatctcaggaaga |
14339499 |
T |
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