View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_47 (Length: 399)
Name: NF6867A_low_47
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_47 |
 | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0007 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 149679 - 149871
Alignment:
| Q |
20 |
catcaccaacatcaacaatcatcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
149679 |
catcaccaacatcaacaatcatcatcatcacaacaaattgttgtaagtggaagtggaacaaacccttttatttcaactccattatatgtttcaagtggtg |
149778 |
T |
|
| Q |
120 |
gtgcaagttcttcaccttttgaaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
149779 |
gtgcaagttcttcaccttttgaaacccaatttgaaacatccttaaccacaaaaagaccaagatatagtggacaatggaagcttctaccttcac |
149871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 329 - 399
Target Start/End: Original strand, 149988 - 150058
Alignment:
| Q |
329 |
ttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaatgccttgtcaagaagg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
149988 |
ttagctgcttcttcatcagagacaacttcatcacaatctcatgatcattcaccaatgccttgtcaagaagg |
150058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University