View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_48 (Length: 399)
Name: NF6867A_low_48
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 8e-71; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 233 - 393
Target Start/End: Original strand, 33399827 - 33399989
Alignment:
| Q |
233 |
aggacagctgattccttccttttgaggtgctataaattgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaga |
332 |
Q |
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| T |
33399827 |
aggacagctgattccttccttttgaggtgctataacttgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaat |
33399926 |
T |
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| Q |
333 |
gtggcttcttttcgttgtagtcttcacataaattcttgaaga--atagaaatgaatctcttca |
393 |
Q |
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| T |
33399927 |
gtggcttcttttcgttgtagtcttcacataaattcttgaagatcatagaaatgaatcttttca |
33399989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 40 - 199
Target Start/End: Complemental strand, 32493717 - 32493567
Alignment:
| Q |
40 |
gccgaaagcgccattattgagatgatgcatttggtgtctttagggggattagtttccactagctaattttcggtcaaatcttccataaattctttctcat |
139 |
Q |
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| T |
32493717 |
gccgaaagcgccattattgagatgttgcatttggtg---------ggattagtttccactacctaagtttcgggcaaatcttccataaattctttctcat |
32493627 |
T |
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| Q |
140 |
tcttcctataatttgttgctaatttttgacttgtttgcctaaaatgccttgcagcttgat |
199 |
Q |
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| T |
32493626 |
tcttcctataatttggtgctaatttttgacttgtttgcctaaaatgccttgcagcttgat |
32493567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 33399698 - 33399795
Alignment:
| Q |
29 |
aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagggggattagtttccactagctaattttcggtcaaatcttccata |
126 |
Q |
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| T |
33399698 |
aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata |
33399795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 32492895 - 32492827
Alignment:
| Q |
208 |
tggacacaatgctcccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa |
276 |
Q |
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| T |
32492895 |
tggacgcaatgcccccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa |
32492827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 32492828 - 32492759
Alignment:
| Q |
326 |
aacaagagtggcttcttttcgttgtagtcttcacata--aattcttgaagaatagaaatgaatctcttca |
393 |
Q |
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| T |
32492828 |
aacaagagtggcttcttttcgttgcagtcttcacatataaattcttgaagaatagaaatgaatctcttca |
32492759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20287479 - 20287513
Alignment:
| Q |
1 |
ataaatatgaaagtcaaacagaggtgacaagacgg |
35 |
Q |
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| T |
20287479 |
ataaatatgaaagtcaaacagaggtgacaagacgg |
20287513 |
T |
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