View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_49 (Length: 397)
Name: NF6867A_low_49
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 54 - 392
Target Start/End: Original strand, 31251816 - 31252154
Alignment:
| Q |
54 |
taacattaaacctgttattttacatactaagtcatnnnnnnnnnnnnnncaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactcta |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31251816 |
taacattaaacctgttattttacatactaagtcataaaaaggaaaaaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaattcta |
31251915 |
T |
|
| Q |
154 |
gatgtcattcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31251916 |
gatgtcattcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatc |
31252015 |
T |
|
| Q |
254 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31252016 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatc |
31252115 |
T |
|
| Q |
354 |
agggccaacattaatttgtgatgcaggagagatggattt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252116 |
agggccaacattaatttgtgatgcaggagagatggattt |
31252154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 103 - 392
Target Start/End: Complemental strand, 25815278 - 25814990
Alignment:
| Q |
103 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25815278 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
25815179 |
T |
|
| Q |
203 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25815178 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggggtcattttatacatggtaatgaaatgagataagaatcaa |
25815079 |
T |
|
| Q |
303 |
ttagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgatgcaggagagatggattt |
392 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
25815078 |
-tagatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaacattaatttgtaatgcaagagagatggattt |
25814990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 248 - 392
Target Start/End: Complemental strand, 23052912 - 23052768
Alignment:
| Q |
248 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgaga |
347 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
|
| Q |
348 |
attatcagggccaacattaatttgtgatgcaggagagatggattt |
392 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23052812 |
tttatcagaaccaacattaatatgtgatgcaggagagatggattt |
23052768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 23052961 - 23052912
Alignment:
| Q |
167 |
cacaaaagtggtgatttattaggggtagcattccaaaactgcataaaactt |
217 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
23052961 |
cacacaagtggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University