View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_493 (Length: 211)

Name: NF6867A_low_493
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_493
NF6867A_low_493
[»] chr5 (7 HSPs)
chr5 (2-211)||(29013076-29013285)
chr5 (1-161)||(29365815-29365974)
chr5 (33-192)||(24085110-24085269)
chr5 (111-206)||(29014953-29015048)
chr5 (121-177)||(11095406-11095462)
chr5 (128-178)||(10391444-10391494)
chr5 (135-175)||(34117473-34117513)
[»] chr6 (1 HSPs)
chr6 (124-178)||(10016725-10016779)
[»] chr4 (2 HSPs)
chr4 (129-180)||(24193632-24193683)
chr4 (125-178)||(28615436-28615489)
[»] chr2 (3 HSPs)
chr2 (128-178)||(41809163-41809213)
chr2 (129-177)||(787435-787483)
chr2 (122-178)||(6547991-6548047)
[»] chr7 (1 HSPs)
chr7 (125-178)||(529464-529517)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 29013285 - 29013076
Alignment:
Q  2 aaaaatgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagtt 101  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29013285 aaaaatgtttctttttgtagcttgtttttttgtttctcttacgtgagtgaggtttttattcaatatgctctattgggttcaattatttagtggaaaagtt 29013186  T
Q  102 gaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaatacaaacac 201  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29013185 gaaaactttgatttaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaacacaaacac 29013086  T
Q  202 caaactcgat 211  Q
    ||||| ||||    
T  29013085 caaacacgat 29013076  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 29365974 - 29365815
Alignment:
Q  1 gaaaaatgtttctttttgtagcttgnnnnnnngtttctcttacgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagt 100  Q
    |||||||||||||||||||||||||       |||||||| | |||||||| |||||||||||||||| |||||||||||||| |||||||||||||| |    
T  29365974 gaaaaatgtttctttttgtagcttgtttttttgtttctctcatgtgagtgaagtttttattcaatatgctctattgggttcaactatttagtggaaaaat 29365875  T
Q  101 tgaaaactttgattgaaagtttaaggtctgtttggattggattattgaagcttatctgctg 161  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||    
T  29365874 tgaaaactttgattg-aagtttaaggtccatttggattggattattgaggcttatctgctg 29365815  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 24085269 - 24085110
Alignment:
Q  33 gtttctcttacgtgagtgaggtttttattcaatatgatctattgggttcaattatttagtggaaaagttgaaaactttgattgaaagtttaaggtctgtt 132  Q
    |||||||||| |||| ||||||||| ||||| | |  | |||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||    
T  24085269 gtttctcttatgtgactgaggttttaattcagtttactatattgggttcaattattttgtagaaaagttgaaaacgtggattgaaagtttaaggtctgtt 24085170  T
Q  133 tggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaa 192  Q
    ||||||||||||| |||||||| |  ||| |||||||||||||||||| ||||| |||||    
T  24085169 tggattggattatagaagcttaccgactgacataaacacttgtgagttttgaagcacgaa 24085110  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 29015048 - 29014953
Alignment:
Q  111 gattgaaagtttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgagttatgaagtacgaatacaaacaccaaac 206  Q
    |||||||||||||||| | |||||||||||||||| |||||||| | |||| ||||||||||| |||||| ||||| |||||  || |||||||||    
T  29015048 gattgaaagtttaaggcccgtttggattggattatagaagcttaccggctgacataaacacttctgagttctgaagcacgaacccagacaccaaac 29014953  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 11095406 - 11095462
Alignment:
Q  121 ttaaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtga 177  Q
    |||||||||||||||| ||| ||||| |||||||||| ||| |||||||||||||||    
T  11095406 ttaaggtctgtttggactggtttatttaagcttatctactgacataaacacttgtga 11095462  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 10391494 - 10391444
Alignment:
Q  128 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 178  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  10391494 ctgtttcgattggcttatttaagcttatctgctggcataatcacttgtgag 10391444  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 34117473 - 34117513
Alignment:
Q  135 gattggattattgaagcttatctgctggcataaacacttgt 175  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  34117473 gattggcttattggagcttatctactggcataaacacttgt 34117513  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 10016779 - 10016725
Alignment:
Q  124 aggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 178  Q
    ||||||||||||||||| |||||  ||||||||| | ||||||||||||||||||    
T  10016779 aggtctgtttggattggtttatttgagcttatctacaggcataaacacttgtgag 10016725  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 24193683 - 24193632
Alignment:
Q  129 tgtttggattggattattgaagcttatctgctggcataaacacttgtgagtt 180  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttgtgagtt 24193632  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 28615489 - 28615436
Alignment:
Q  125 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 178  Q
    |||||||||||||||  ||||| ||| |||||| || |||||||||||||||||    
T  28615489 ggtctgtttggattgacttatttaagtttatctactagcataaacacttgtgag 28615436  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 41809163 - 41809213
Alignment:
Q  128 ctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 178  Q
    ||||||||||||| || || |||||||| || |||||||||||||||||||    
T  41809163 ctgtttggattggttttttaaagcttatttgttggcataaacacttgtgag 41809213  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 787483 - 787435
Alignment:
Q  129 tgtttggattggattattgaagcttatctgctggcataaacacttgtga 177  Q
    ||||||||||||||||||  ||| ||||| ||||||||| |||||||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtga 787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 6548047 - 6547991
Alignment:
Q  122 taaggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 178  Q
    ||||||||||||||||||  ||||| |||||||||| || ||||||  |||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgag 6547991  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 529517 - 529464
Alignment:
Q  125 ggtctgtttggattggattattgaagcttatctgctggcataaacacttgtgag 178  Q
    |||||| ||||||||  |||||  ||||||||| ||||||||||||||||||||    
T  529517 ggtctgattggattgacttatttgagcttatctactggcataaacacttgtgag 529464  T

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