View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_5 (Length: 618)
Name: NF6867A_low_5
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_5 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr1 (8 HSPs) |
| |
|
| [»] scaffold0703 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 54422188 - 54422805
Alignment:
| Q |
1 |
aatcatcacaatgaataccgcgagtaatgaggtttgtgcgtgttggaaggcattggtgagcgagacaccaaaggaaagatcggacacgatcagggacctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||| |
|
|
| T |
54422188 |
aatcatcacaatgaataccgcgagtaatgaggtttgtgcgtgttggaaggcattggtgagcgagacgccaaaggaaagatcggacacgatgatggatctg |
54422287 |
T |
|
| Q |
101 |
taagttccaaagagtcgtccaagaattatttgcattatgtgttgtcgatgaatggaataggtcaatgcacacacgatatgcagatttcacagaataatgc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
54422288 |
taagttccaaagagtcatccaagaattatttgcattatgtgttgttgatgaatggaataggtcaatgcacacacgatatgcagattttacagaataatgc |
54422387 |
T |
|
| Q |
201 |
ccatcattagtagctttccaaattctgatatcctcacgcttgcggggatatagggggattgggagtacaactgcaacatcaacaggggatagtaaagaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54422388 |
ccatcattagtagctttccaaattctgatatcctcacgcttggggggatatagggggattgagagtacaactgcaacatcaacaggggatagtaaagagt |
54422487 |
T |
|
| Q |
301 |
gcagtaacatactgttccaggaattcatgtcagagttcataagggaatttatcgtaacatccctatattgagggggtggaggcgttaacagtttgcaaga |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54422488 |
gcagtaacatactgttcaaggaattcatgtcagagttcataagggaatttaccgtaacatcctcatattgagggggtggaggtgttaacagtttgcaaga |
54422587 |
T |
|
| Q |
401 |
tgggagaccgcgtatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccat |
500 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54422588 |
cgggagatcgcatatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggcactccat |
54422687 |
T |
|
| Q |
501 |
agcctcctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagt |
600 |
Q |
| |
|
|| ||||| |||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
54422688 |
agactccttcaagtgtagcttggattgtgaccaagacgtgcttccaagaaatcccgcctcgggaagtatttggctttgagagtatgagcgagtaaggagt |
54422787 |
T |
|
| Q |
601 |
ttgagtcgtgcatgagtt |
618 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
54422788 |
ttgagtcgtgcatgagtt |
54422805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 414 - 525
Target Start/End: Complemental strand, 32498435 - 32498324
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||||||||||| ||||||| || || || || || ||||| ||||| ||||||||||| | |||||| ||||||||||| |||||||| | |
|
|
| T |
32498435 |
atccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
32498336 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
32498335 |
tgtaacttggat |
32498324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 581
Target Start/End: Complemental strand, 43732809 - 43732638
Alignment:
| Q |
410 |
gcgtatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctc |
509 |
Q |
| |
|
||||| |||||||| | |||||| ||||||||| | |||| ||| |||||||||||||| ||||| |||| | ||||| |||||| || || ||| |
|
|
| T |
43732809 |
gcgtacccaaggcacattccacacattaattttggtaccattaccaatcttccatctatgacccaaagtaactaagtgttgggcactccaaagacttctc |
43732710 |
T |
|
| Q |
510 |
caagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgaga |
581 |
Q |
| |
|
|||||||||||||||| ||||||||| | || |||| |||| || | | ||||||||||||||||||||| |
|
|
| T |
43732709 |
caagtgtagcttggattatgaccaagaggggcctccacgaaatcctgtcgtgggaagtatttggctttgaga |
43732638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 33 - 618
Target Start/End: Complemental strand, 20128905 - 20128320
Alignment:
| Q |
33 |
tttgtgcgtgttggaaggcattggtgagcgagacaccaaaggaaagatcggacacgatcagggacctgtaagttccaaagagtcgtccaagaattatttg |
132 |
Q |
| |
|
||||| || |||||||| | ||||||||| | | |||||||||||||| |||||| | |||||| || |||||||| |||||| |||||||||| || |
|
|
| T |
20128905 |
tttgtacgagttggaagactttggtgagctaagcgccaaaggaaagatcagacacggtgagggacatgcaagttccatagagtcatccaagaattgttat |
20128806 |
T |
|
| Q |
133 |
cattatgtgttgtcgatgaatggaataggtcaatgcacacacgatatgcagatttcacagaataatgcccatcattagtagctttccaaattctgatatc |
232 |
Q |
| |
|
|| || | ||||| ||| ||||| ||||||||||| | ||| ||||| ||||| || ||||||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
20128805 |
cactacgagttgtttgtgagtggaagaggtcaatgcaaatacggtatgctgatttaacggaataattcccatcagtagtagctttccaaattctaatatc |
20128706 |
T |
|
| Q |
233 |
ctcacgcttgcggggatatagggggattgggagtacaactgcaacatcaacaggggatagtaaagaatgcagtaacatactgttccaggaattcatgtca |
332 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||| ||| ||| |||||| |||| | ||||| ||| ||||| | | |||||||||| ||||||| ||| |
|
|
| T |
20128705 |
ctcacgcgtgcggggatataaggggattgagagaacacttgcgacatcagcaggaggtagtagagagtgcagaaccgtactgttccaagaattcagatca |
20128606 |
T |
|
| Q |
333 |
gagttcataagggaatttatcgtaacatccctatattgagggggtggaggcgttaacagtttgcaagatgggagaccgcgtatccaaggcatactccaca |
432 |
Q |
| |
|
| |||||||| ||||||| ||||||||||| || ||||| || ||||| | |||| | |||||||| ||||| | || ||||||||||||||||||| |
|
|
| T |
20128605 |
ggattcataagtgaatttaccgtaacatccccatggtgaggaggaggaggtgctaacggcttgcaagaggggaggctacgaatccaaggcatactccaca |
20128506 |
T |
|
| Q |
433 |
tattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtgtagcttggatggtgacc |
532 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
20128505 |
tattaatttttgtgccatcaccaatcttccatctatgtcccaaggtaagaagagattgggtactccatagactcctccaagtgtagcttggattatgacc |
20128406 |
T |
|
| Q |
533 |
aagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagtcgtgcatgagtt |
618 |
Q |
| |
|
|||| |||||||||||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20128405 |
aagaggtgcttccaagaaatcccgtatgggaaagtatttggctttgagagtacgagtgagtaaggagtttgagtcggtcatgagtt |
20128320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 414 - 607
Target Start/End: Original strand, 12459974 - 12460167
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||| ||| ||||||||||||| ||||| ||||| | |||||||||||||| || |||||||| | |
|
|
| T |
12459974 |
atccaaggcattgaccacacatttatttttgagccattaccaatcttccatctatagcccaacgtaagtaatgattgggtactccaaagactcctccatg |
12460073 |
T |
|
| Q |
514 |
tgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagtc |
607 |
Q |
| |
|
| |||||||||| ||||||||| |||||||||||||| |||| | ||||| |||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
12460074 |
tatagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaatatttggctttgaggacacgagtaagtaaggaatttgagtc |
12460167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 438 - 601
Target Start/End: Complemental strand, 14647486 - 14647323
Alignment:
| Q |
438 |
atttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtgtagcttggatggtgaccaagat |
537 |
Q |
| |
|
|||||||| ||||| || || ||||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||| ||| ||||| |
|
|
| T |
14647486 |
atttttgaaccatctccaattttccatctatgacccaaggtaagcagagattgagtactccaaagactcctccatatgtagcttggattatgatcaagag |
14647387 |
T |
|
| Q |
538 |
gtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtt |
601 |
Q |
| |
|
|||| |||||||| |||| | ||||| ||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
14647386 |
gtgcatccaagaagtcccgacgagggaaatatttagctttgagaatacgagtgagtaaagagtt |
14647323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 405 - 608
Target Start/End: Original strand, 27644539 - 27644742
Alignment:
| Q |
405 |
agaccgcgtatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcc |
504 |
Q |
| |
|
||||||| |||||||||||| |||||| ||| ||||| || |||| || |||||||| || || || |||||||||| ||||||||||| || | |
|
|
| T |
27644539 |
agaccgcagatccaaggcatagtccacacatttattttggaaccatttccaatcttccacctgtgtcctaaggtaagcaagtgctgggtactccaaagac |
27644638 |
T |
|
| Q |
505 |
tcctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttga |
604 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| || ||||||||| ||| | |||||| |||||||||||||| ||||||| ||||||||| | || |
|
|
| T |
27644639 |
tcctccaagtatagcttggattatgaccaagagaggcatccaagaaatccctacgcgggaaatatttggctttgaggatacgagtaagtaaggaggtaga |
27644738 |
T |
|
| Q |
605 |
gtcg |
608 |
Q |
| |
|
|||| |
|
|
| T |
27644739 |
gtcg |
27644742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 412 - 608
Target Start/End: Original strand, 51492957 - 51493153
Alignment:
| Q |
412 |
gtatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctcca |
511 |
Q |
| |
|
|||||||||||||| ||| | ||| || ||||| ||| | || |||||||||||||| ||||||||||| | |||||| || ||||| || | |||||| |
|
|
| T |
51492957 |
gtatccaaggcatataccatacatttatgtttgaaccagctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagacccctcca |
51493056 |
T |
|
| Q |
512 |
agtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagtcg |
608 |
Q |
| |
|
| ||||||||||| || |||||| | || ||||||||| || || ||||||||||| |||||||| |||||| |||||||| ||||||||| |
|
|
| T |
51493057 |
tgcgtagcttggattatggccaagaggggcatccaagaaatccattctagggaagtatttagctttgaggacacgagtaagtaaggaatttgagtcg |
51493153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 581
Target Start/End: Complemental strand, 44138618 - 44138453
Alignment:
| Q |
416 |
ccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtg |
515 |
Q |
| |
|
||||||| | ||||||| |||||| |||| |||| ||| |||||||||||||| ||||||||||| | | ||| | ||||||||| || ||||| ||| |
|
|
| T |
44138618 |
ccaaggcgtgctccacactttaattcttgaaccataaccaatcttccatctatgtcccaaggtaagtaaatgttgtgcactccataggcttctccaggtg |
44138519 |
T |
|
| Q |
516 |
tagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgaga |
581 |
Q |
| |
|
|||||||||| || || ||| | || ||||||||| ||| | |||||| ||||| ||||||||| |
|
|
| T |
44138518 |
tagcttggattatggccgagaggggcatccaagaaatcccttcgcgggaaatatttagctttgaga |
44138453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 525
Target Start/End: Complemental strand, 50181726 - 50181615
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
|||||||||||| |||||| |||| ||| || || | || |||||||||||||| || |||||||| | |||||| ||||||||||| |||||||| | |
|
|
| T |
50181726 |
atccaaggcatattccacacattattttgagaaccgtttccaatcttccatctatggcctaaggtaagtaaagattgcgtactccatagactcctccatg |
50181627 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
| || ||||||| |
|
|
| T |
50181626 |
tataacttggat |
50181615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 550
Target Start/End: Original strand, 13189517 - 13189653
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||| | |||| || ||||| |||||||| || || |||||||||| ||||||||||| | | ||| |||||||| || || ||||||| |
|
|
| T |
13189517 |
atccaaggcatgtttcacacgttgattttagagccatctccaattttccatctataacccaaggtaagtaaatgttgagtactccaaagacttctccaag |
13189616 |
T |
|
| Q |
514 |
tgtagcttggatggtgaccaagatgtgcttccaagaa |
550 |
Q |
| |
|
|||||||||||| || |||| | |||| |||||||| |
|
|
| T |
13189617 |
tgtagcttggattatggccaataggtgcatccaagaa |
13189653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 17214616 - 17214399
Alignment:
| Q |
33 |
tttgtgcgtgttggaaggcattggtgagcgagacaccaaaggaaagatcggacacgatcagggacctgtaagttccaaagagtcgtccaagaattatttg |
132 |
Q |
| |
|
||||| || |||||||||| ||||||||| || | |||||||||||||| |||||| | |||||| || |||||||| |||||| || ||||||| || |
|
|
| T |
17214616 |
tttgtacgagttggaaggctttggtgagctaggcgccaaaggaaagatcagacacggtgagggacatgcaagttccatagagtcatctaagaattgttat |
17214517 |
T |
|
| Q |
133 |
cattatgtgttgtcgatgaatggaataggtcaatgcacacacgatatgcagatttcacagaataatgcccatcattagtagctttccaaattctgatatc |
232 |
Q |
| |
|
|| || | ||||| ||||| ||||| ||||||||||| | ||| ||||| ||||| || ||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
17214516 |
cactacgagttgttgatgagtggaagaggtcaatgcaaatacggtatgctgatttaacggaataatttccatcagtagtagctttccaaattctaatatc |
17214417 |
T |
|
| Q |
233 |
ctcacgcttgcggggata |
250 |
Q |
| |
|
|||| || |||||||||| |
|
|
| T |
17214416 |
ctcatgcgtgcggggata |
17214399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 459 - 607
Target Start/End: Original strand, 21731064 - 21731212
Alignment:
| Q |
459 |
ttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcc |
558 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| || |||||||| |||||||||||| ||||||||| |||| |||||||| |||| | |
|
|
| T |
21731064 |
ttccatctatggcccaaggtaagaagagattgagtactccaaagactcctccatatgtagcttggattatgaccaagaggtgcatccaagaagtcccgac |
21731163 |
T |
|
| Q |
559 |
tcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagtc |
607 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
21731164 |
gagggaagtatttagctttgagaatacgagtgagtaaggagttagagtc |
21731212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 414 - 607
Target Start/End: Complemental strand, 16862130 - 16861937
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||| ||||| ||| || ||||| |||| ||| ||||||||||||| ||||| ||||| | |||||| ||||||| || |||||||| | |
|
|
| T |
16862130 |
atccaaggcattggccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagtaatgattggttactccaaagactcctccatg |
16862031 |
T |
|
| Q |
514 |
tgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagtc |
607 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| |||| | ||||| |||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
16862030 |
tgtagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaatatttggctttgaggacacgagtaagtaaggaatttgagtc |
16861937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 414 - 525
Target Start/End: Original strand, 10160146 - 10160257
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||||||||| | |||||| ||||||||||| |||||||| | |
|
|
| T |
10160146 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
10160245 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
| || ||||||| |
|
|
| T |
10160246 |
tataacttggat |
10160257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 494 - 599
Target Start/End: Complemental strand, 21951268 - 21951163
Alignment:
| Q |
494 |
actccatagcctcctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagt |
593 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||| || || ||| |||||||| |||| | ||||| ||||| ||||||||| | ||||||||| |
|
|
| T |
21951268 |
actccatatgctcctccaagtatagcttggattgtgactaatattggctaccaagaaatcccgacgagggaaatatttagctttgagaatgcgagtgagt |
21951169 |
T |
|
| Q |
594 |
aaggag |
599 |
Q |
| |
|
|||||| |
|
|
| T |
21951168 |
aaggag |
21951163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 438 - 606
Target Start/End: Original strand, 51141355 - 51141523
Alignment:
| Q |
438 |
atttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtgtagcttggatggtgaccaagat |
537 |
Q |
| |
|
|||||||| ||||| || |||||||||||||| ||||||||||||||| |||| |||||||| || | ||||| ||||| ||||||| ||||||| | |
|
|
| T |
51141355 |
atttttgaaccatctccaatcttccatctatgacccaaggtaagcagatattgagtactccaaagaattctccatgtgtaacttggattatgaccaatag |
51141454 |
T |
|
| Q |
538 |
gtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagt |
606 |
Q |
| |
|
| || |||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
51141455 |
gggcatccaagaagtcccgacgagggaagtatttggctttgagaatacgagtgagtaaggagttagagt |
51141523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 411 - 608
Target Start/End: Original strand, 52966043 - 52966240
Alignment:
| Q |
411 |
cgtatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctcc |
510 |
Q |
| |
|
||||||||||||||| ||| | ||| || ||||| ||||| || |||||||||||||| ||||||||||| | |||||| || ||||| || ||||||| |
|
|
| T |
52966043 |
cgtatccaaggcatagaccatacatttatgtttgaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctcc |
52966142 |
T |
|
| Q |
511 |
aagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagtcg |
608 |
Q |
| |
|
| ||||||||||||| || |||||| | || ||||||||| ||| || ||||||||||| |||| |||| |||||| |||||||| ||||||||| |
|
|
| T |
52966143 |
atgtgtagcttggattatggccaagaggggcatccaagaaatcccttctagggaagtatttagcttagagaacacgagtaagtaaggaatttgagtcg |
52966240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 525
Target Start/End: Original strand, 2500406 - 2500517
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| || || || ||||| ||||| ||||||||||| | |||||| ||||||||||| |||||||| | |
|
|
| T |
2500406 |
atccaaggcatactccacacattaatttgagagccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
2500505 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
2500506 |
tgtaacttggat |
2500517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 551
Target Start/End: Original strand, 24596087 - 24596210
Alignment:
| Q |
428 |
ccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtgtagcttggatgg |
527 |
Q |
| |
|
||||| ||||||||| || |||| | | |||||||||| | | |||| ||||| | |||||||| |||||| || |||||||| ||||||||||||| | |
|
|
| T |
24596087 |
ccacacattaattttcgaaccattaacaatcttccatcgaaggtccaaagtaagtaaagattgggcactccaaagactcctccatgtgtagcttggattg |
24596186 |
T |
|
| Q |
528 |
tgaccaagatgtgcttccaagaaa |
551 |
Q |
| |
|
||||||| | |||| ||||||||| |
|
|
| T |
24596187 |
tgaccaaaaggtgcatccaagaaa |
24596210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 599
Target Start/End: Complemental strand, 25898212 - 25898130
Alignment:
| Q |
517 |
agcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggag |
599 |
Q |
| |
|
||||||||| |||||||| | ||| ||||||||| ||| | ||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
25898212 |
agcttggatcgtgaccaatagttgcatccaagaaatcccttttagggaagtatttggctttgagaatacgagtaagtaaggag |
25898130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 538
Target Start/End: Complemental strand, 2332525 - 2332404
Alignment:
| Q |
416 |
ccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtg |
515 |
Q |
| |
|
||||||||| |||||| ||||||||| ||||||||||| || |||||||||| ||||||||| | | || |||||||| || ||||||||||| |
|
|
| T |
2332525 |
ccaaggcattttccacacattaattttagagccatcaccaattttccatctataatacaaggtaagtaaatgtt-agtactccaaagactcctccaagta |
2332427 |
T |
|
| Q |
516 |
tagcttggatggtgaccaagatg |
538 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
2332426 |
tagcttggattatgaccgagatg |
2332404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 411 - 608
Target Start/End: Original strand, 42577952 - 42578149
Alignment:
| Q |
411 |
cgtatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctcc |
510 |
Q |
| |
|
||||||||||||||| ||| | ||| || ||||| ||||| || |||||||||||||| ||||||||||| | |||||| || ||||| || ||||||| |
|
|
| T |
42577952 |
cgtatccaaggcatagaccatacatttatgtttgaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctcc |
42578051 |
T |
|
| Q |
511 |
aagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagtcg |
608 |
Q |
| |
|
| ||||||||||||| || |||||| | || ||||||||| ||| || ||||||||||| |||| ||| |||||| |||||||||||||||||| |
|
|
| T |
42578052 |
atgtgtagcttggattatggccaagaggggcatccaagaaatcccttctagggaagtatttagcttcgaggacacgagtaagtaaggagtttgagtcg |
42578149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 456 - 607
Target Start/End: Original strand, 14277223 - 14277374
Alignment:
| Q |
456 |
atcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaacccc |
555 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||| |||||||| || ||||||| |||||||||||| ||||||||| | | |||||||| ||| |
|
|
| T |
14277223 |
atcttccatctatgacccaatgtatacagagattgagtactccaaagactcctccggatgtagcttggattatgaccaagagggacatccaagaagtccc |
14277322 |
T |
|
| Q |
556 |
gcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagtc |
607 |
Q |
| |
|
| | ||||||||||||||||||||| ||| || |||||||||||| ||||| |
|
|
| T |
14277323 |
gacaagggaagtatttggctttgagaatacaagcgagtaaggagttagagtc |
14277374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 414 - 525
Target Start/End: Complemental strand, 23150158 - 23150047
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||||||||||| |||||||| || || || || || ||||| ||||| ||||||||||| | |||||| ||||||||||| |||||||| | |
|
|
| T |
23150158 |
atccaaggcatactccacacattaatttgagaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
23150059 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
23150058 |
tgtaacttggat |
23150047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 33496302 - 33496399
Alignment:
| Q |
438 |
atttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgg-gtactccatagcctcctccaagtgtagcttggatggtgaccaa |
534 |
Q |
| |
|
||||| |||||||| || |||||||||||||| ||||| || |||| | ||| | ||||||||| | |||||||| ||||||||||||| ||||||| |
|
|
| T |
33496302 |
attttcgagccatctccaatcttccatctatgacccaaagtgagcaaatatttgagtactccatggactcctccatgtgtagcttggattatgaccaa |
33496399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 525
Target Start/End: Original strand, 13093636 - 13093747
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
|||||||||||| |||||| ||||||||| | || ||||| || |||||||||| ||||| ||||||| | ||| |||||||| || ||||||||| |
|
|
| T |
13093636 |
atccaaggcatattccacacattaattttcgtaccgtcaccaattttccatctataacccaaagtaagcaaatgttgagtactccaaagattcctccaag |
13093735 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
| ||||||||| |
|
|
| T |
13093736 |
taaagcttggat |
13093747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 29291705 - 29291610
Alignment:
| Q |
504 |
ctcctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggag |
599 |
Q |
| |
|
||||||||||| || ||||||| |||||||| || | |||||||| |||| | ||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
29291705 |
ctcctccaagtataacttggattgtgaccaatattggtatccaagaagtcccgtcgagggaaatatttggctttgagaatgcgagtgagtaaggag |
29291610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 414 - 607
Target Start/End: Original strand, 866 - 1059
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||| ||||| ||| || ||||| |||| ||| ||||||||||||| ||||| ||||| | |||||| ||||||| || |||||||| | |
|
|
| T |
866 |
atccaaggcattgaccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagtaatgattggatactccaaagactcctccatg |
965 |
T |
|
| Q |
514 |
tgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggagtttgagtc |
607 |
Q |
| |
|
| |||||||||| ||||||||| |||||||||||||| |||| | ||||| |||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
966 |
tatagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaatatttggctttgaggacacgagtaagtaaggaatttgagtc |
1059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 414 - 525
Target Start/End: Original strand, 9181922 - 9182033
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||||||||| | |||||| ||||||||||| |||||||| | |
|
|
| T |
9181922 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
9182021 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
| || ||||||| |
|
|
| T |
9182022 |
tataacttggat |
9182033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 414 - 525
Target Start/End: Complemental strand, 11626351 - 11626240
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||||||||| | |||||| ||||||||||| |||||||| | |
|
|
| T |
11626351 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
11626252 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
| || ||||||| |
|
|
| T |
11626251 |
tataacttggat |
11626240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 581
Target Start/End: Original strand, 29929614 - 29929761
Alignment:
| Q |
434 |
attaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtgtagcttggatggtgacca |
533 |
Q |
| |
|
||||||||| | |||| ||| |||||||||||||| ||||| ||||||| || | ||||||| || ||||| ||||||| |||||||| |||||| |
|
|
| T |
29929614 |
attaattttggtaccattacctatcttccatctatgacccaaagtaagcaagtgttagatactccaaagactcctgcaagtgttgcttggattatgacca |
29929713 |
T |
|
| Q |
534 |
agatgtgcttccaagaaaccccgcctcgggaagtatttggctttgaga |
581 |
Q |
| |
|
||| | | ||||||||| |||| | ||||||||||| |||||||| |
|
|
| T |
29929714 |
agagggtcgtccaagaaatcccgtcgtgggaagtatttatctttgaga |
29929761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 599
Target Start/End: Complemental strand, 35612404 - 35612309
Alignment:
| Q |
504 |
ctcctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggag |
599 |
Q |
| |
|
||||||||||| || ||||||| |||||||| || | |||||||| |||| | ||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
35612404 |
ctcctccaagtataacttggattgtgaccaatattggtatccaagaagtcccgtcgagggaaatatttggctttgagaatgcgagtgagtaaggag |
35612309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 414 - 580
Target Start/End: Complemental strand, 46598688 - 46598522
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||| ||||||||||||| |||||| || || ||||| || |||||||||||||| ||||| ||||| | |||||| |||||||||| |||||||| | |
|
|
| T |
46598688 |
atccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcctccagg |
46598589 |
T |
|
| Q |
514 |
tgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgag |
580 |
Q |
| |
|
| |||||||||| ||||| || ||| |||||||| |||| || ||||||||||| |||||||| |
|
|
| T |
46598588 |
tatagcttggattatgaccgagggttgcatccaagaagtcccgtctagggaagtatttagctttgag |
46598522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 525
Target Start/End: Original strand, 12351928 - 12352039
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| || || || ||||| ||||| ||||||||||| | |||||| ||||||||||| |||||||| | |
|
|
| T |
12351928 |
atccaaggcatactccacacattaatttgagagccgtctccaattttccagctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
12352027 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
12352028 |
tgtaacttggat |
12352039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 525
Target Start/End: Complemental strand, 31801371 - 31801260
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||| ||||||||||||| |||||| || || ||||| || |||||||||||||| ||||| ||||| | |||||| |||||||||| |||||||||| |
|
|
| T |
31801371 |
atccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcctccaag |
31801272 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
| |||||||||| |
|
|
| T |
31801271 |
tatagcttggat |
31801260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 414 - 525
Target Start/End: Complemental strand, 41146643 - 41146532
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||||||||||||||||| ||||||| || || || || || ||||| ||||| ||||||||||| | |||||| ||||||||||| |||||||| | |
|
|
| T |
41146643 |
atccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
41146544 |
T |
|
| Q |
514 |
tgtagcttggat |
525 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
41146543 |
tgtaacttggat |
41146532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 414 - 580
Target Start/End: Complemental strand, 512741 - 512575
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaag |
513 |
Q |
| |
|
||||| || |||||||||| |||||| || || ||||| | ||||||||||||| ||||| ||||| | |||||| |||||||||| ||||| || | |
|
|
| T |
512741 |
atccacggaatactccacacattaatcttagaaccatctacattcttccatctatggcccaaagtaagtaaagattgagtactccataagctccttcagg |
512642 |
T |
|
| Q |
514 |
tgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgag |
580 |
Q |
| |
|
| |||||||||| ||||| || ||| |||||||| |||| || ||||||||||| |||||||| |
|
|
| T |
512641 |
tatagcttggattatgaccgagggttgcatccaagaagtcccgtctagggaagtatttagctttgag |
512575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 525
Target Start/End: Original strand, 18222722 - 18222791
Alignment:
| Q |
456 |
atcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtgtagcttggat |
525 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||||||| || ||||||||||| |||||||||| |
|
|
| T |
18222722 |
atcttccatctatgccccaaggtaagtaatgattgaatactccaaagactcctccaagtatagcttggat |
18222791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 481
Target Start/End: Complemental strand, 29843500 - 29843433
Alignment:
| Q |
414 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaag |
481 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||| ||| |||||||||| ||||||||||| |
|
|
| T |
29843500 |
atccaaggcatactccacacattaatttgagaatcatcactaatcgtccatctatggcccaaggtaag |
29843433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 410 - 580
Target Start/End: Complemental strand, 647423 - 647254
Alignment:
| Q |
410 |
gcgtatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctc |
509 |
Q |
| |
|
|||||||||||| || |||||| || || || ||||||||||| || |||||||||| ||||| ||||| | |||||| ||||||||||| |||||| |
|
|
| T |
647423 |
gcgtatccaaggtgtagtccacacgttgatattcgagccatcaccaat-ttccatctatatcccaatgtaagtaaagattgagtactccatagactcctc |
647325 |
T |
|
| Q |
510 |
caagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgag |
580 |
Q |
| |
|
|||||||||||||| | ||| || ||| | || ||||||||| | || || |||||||||||||||||||| |
|
|
| T |
647324 |
caagtgtagcttgggttgtggcccagaggggcctccaagaaatctcgtctagggaagtatttggctttgag |
647254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 411 - 534
Target Start/End: Complemental strand, 4243271 - 4243149
Alignment:
| Q |
411 |
cgtatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctcc |
510 |
Q |
| |
|
|||||||||||||| |||| | ||| ||||| |||||||| || || ||||||||||| ||||| || |||| |||||| ||||||||||| ||||||| |
|
|
| T |
4243271 |
cgtatccaaggcatggtccatagatttattttcgagccatctccaat-ttccatctatgacccaaagtgagcaaagattgagtactccatagactcctcc |
4243173 |
T |
|
| Q |
511 |
aagtgtagcttggatggtgaccaa |
534 |
Q |
| |
|
| || |||||||||| ||||||| |
|
|
| T |
4243172 |
atgtatagcttggattatgaccaa |
4243149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 494 - 599
Target Start/End: Original strand, 8072311 - 8072416
Alignment:
| Q |
494 |
actccatagcctcctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagt |
593 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||| || || ||| |||||||| |||| | ||||| ||||| ||||||||| | ||||||||| |
|
|
| T |
8072311 |
actccatatgctcctccaagtatagcttggattgtgacaaatattggctaccaagaaatcccgacgagggaaatatttagctttgagaatgcgagtgagt |
8072410 |
T |
|
| Q |
594 |
aaggag |
599 |
Q |
| |
|
|||||| |
|
|
| T |
8072411 |
aaggag |
8072416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 599
Target Start/End: Original strand, 4018402 - 4018497
Alignment:
| Q |
504 |
ctcctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggag |
599 |
Q |
| |
|
||||||||||| || ||||||| |||||||| || | |||||||| |||| | ||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
4018402 |
ctcctccaagtataacttggattgtgaccaatattggtatccaagaagtcccgtcgagggaaatatttggctttgagaatgcgagtgagtaaggag |
4018497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 525
Target Start/End: Original strand, 42703921 - 42704030
Alignment:
| Q |
416 |
ccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtg |
515 |
Q |
| |
|
||||||||| |||||| ||||||||| | |||||||| |||||| || |||| ||||| ||||||| |||||||||||| || || |||||||| |
|
|
| T |
42703921 |
ccaaggcatgttccacacattaattttggcaccatcaccaatcttcaatatatgacccaatgtaagcaagtgttgggtactccaaagacttctccaagta |
42704020 |
T |
|
| Q |
516 |
tagcttggat |
525 |
Q |
| |
|
||||||||| |
|
|
| T |
42704021 |
aagcttggat |
42704030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 599
Target Start/End: Complemental strand, 24466090 - 24465998
Alignment:
| Q |
507 |
ctccaagtgtagcttggatggtgaccaagatgtgcttccaagaaaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggag |
599 |
Q |
| |
|
|||||||| || ||||||| |||||||| || | |||||||| |||| | ||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
24466090 |
ctccaagtataacttggattgtgaccaatattggtatccaagaagtcccgtcgagggaaatatttggctttgagaatgcgagtgagtaaggag |
24465998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 599
Target Start/End: Original strand, 237918 - 238067
Alignment:
| Q |
450 |
tcaccgatcttccatctatgccccaaggtaagcagagattgggtactccatagcctcctccaagtgtagcttggatggtgaccaagatgtgcttccaaga |
549 |
Q |
| |
|
||||| ||||||||||||| |||||||| || |||||||| | |||||||| |||||||||||| ||||||||| ||| |||| || || ||||||| |
|
|
| T |
237918 |
tcaccaatcttccatctatagcccaaggttagaagagattgagaactccatatgctcctccaagtgaagcttggattgtggccaatattggcatccaaga |
238017 |
T |
|
| Q |
550 |
aaccccgcctcgggaagtatttggctttgagagtacgagtgagtaaggag |
599 |
Q |
| |
|
|| |||| | ||||| ||||| ||||||||| | ||||||||||||||| |
|
|
| T |
238018 |
aatcccgacgagggaaatatttagctttgagaattcgagtgagtaaggag |
238067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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