View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_503 (Length: 209)

Name: NF6867A_low_503
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_503
NF6867A_low_503
[»] chr1 (10 HSPs)
chr1 (1-209)||(9229857-9230066)
chr1 (71-169)||(9170959-9171057)
chr1 (71-169)||(9178941-9179039)
chr1 (72-169)||(1816309-1816406)
chr1 (71-169)||(9162133-9162231)
chr1 (68-169)||(9219039-9219140)
chr1 (71-154)||(9156221-9156304)
chr1 (71-166)||(9200526-9200621)
chr1 (71-169)||(9118221-9118319)
chr1 (72-168)||(1856639-1856735)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 9229857 - 9230066
Alignment:
Q  1 attgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgtaaaccgtaccgaaacctcctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9229857 attgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgtaaaccgtaccgaaacctcctct 9229956  T
Q  101 gccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagcagttcctgatgcg-cttctcttttagaaagt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  9229957 gccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagtagttcctgatgcgtcttctcttttagaaagt 9230056  T
Q  200 tggcgtagca 209  Q
    ||||||||||    
T  9230057 tggcgtagca 9230066  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 9170959 - 9171057
Alignment:
Q  71 tcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagc 169  Q
    |||||||||||| ||||| ||||||||||||||||| ||||| || || || ||||| ||||| |||||||||||||| |||||| |||| ||||||||    
T  9170959 tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatatttgagc 9171057  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 9178941 - 9179039
Alignment:
Q  71 tcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagc 169  Q
    |||||||||||| ||||| ||||||||||||||||| ||||| || || || ||||| ||||| |||||||||||||| |||||| |||| ||||||||    
T  9178941 tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatatttgagc 9179039  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 1816309 - 1816406
Alignment:
Q  72 cctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagc 169  Q
    |||||| |||| ||||| ||||||||||| || || ||||| ||||| ||| ||||||| ||||||||| | ||||||| |||||||||||| |||||    
T  1816309 cctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagttgttagtagctttccttagttcattttctttgaaaatgtgagc 1816406  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 9162133 - 9162231
Alignment:
Q  71 tcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagc 169  Q
    ||||||| |||| ||||| |||||||||||||| || ||||| || || || ||||| ||||| |||||||| ||||| |||||| |||| ||||||||    
T  9162133 tcctttgaaaactgtaccaaaacctcctctgccgatgattaagctatcatcgtagtttttggtggctttctttagttcctcttctgtgaatatttgagc 9162231  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 9219039 - 9219140
Alignment:
Q  68 aattcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttga 167  Q
    |||||||||| |||| ||||| ||||||||||| || || ||||| || || || ||||| ||||| |||||||||||||| |||||  |||| ||||||    
T  9219039 aattcctttgaaaactgtaccaaaacctcctctaccgatgattaagctttcgtcgtagtttttggtggctttcttaagttcctcttccgtgaatatttga 9219138  T
Q  168 gc 169  Q
    ||    
T  9219139 gc 9219140  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 9156221 - 9156304
Alignment:
Q  71 tcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttc 154  Q
    ||||||| |||| ||||| ||||||||||||||||| |||||  | || || ||||| ||||| |||||||||||||| |||||    
T  9156221 tcctttgaaaactgtaccaaaacctcctctgccaatgattaagttttcatcgtagtttttggtggctttcttaagttcctcttc 9156304  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 9200526 - 9200621
Alignment:
Q  71 tcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttg 166  Q
    |||||||||||| ||||| ||||||||||| || || ||||| || || || || || ||||| |||||||||||||| |||||| |||| |||||    
T  9200526 tcctttgtaaactgtaccaaaacctcctctaccgatgattaagctttcgtcgtattttttggtggctttcttaagttcctcttctgtgaatatttg 9200621  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 9118319 - 9118221
Alignment:
Q  71 tcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgagc 169  Q
    ||||||| |||  ||||||||||||||||| ||||| ||||| || || || ||| ||||||||||||| |||||||| | |||| |||| || |||||    
T  9118319 tcctttgaaaattgtaccgaaacctcctcttccaatgattaagctttcgtcgtagctgttggtagcttttttaagttccttttctgtgaatatctgagc 9118221  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 1856735 - 1856639
Alignment:
Q  72 cctttgtaaaccgtaccgaaacctcctctgccaattattaaactctcctcatagttgttggtagctttcttaagttcatcttctttgaaaatttgag 168  Q
    ||||||||||| ||||| ||||||||| | || || ||||| ||||| ||| | ||||| || |||||| | ||||||| ||||| |||||| ||||    
T  1856735 cctttgtaaactgtaccaaaacctcctttacctatgattaagctctcatcaaatttgttagtggctttccttagttcattttcttcgaaaatgtgag 1856639  T

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