View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_505 (Length: 209)

Name: NF6867A_low_505
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_505
NF6867A_low_505
[»] chr2 (4 HSPs)
chr2 (20-187)||(33629525-33629690)
chr2 (20-87)||(38909037-38909105)
chr2 (38-78)||(36941435-36941475)
chr2 (22-79)||(36944457-36944514)
[»] chr6 (2 HSPs)
chr6 (20-87)||(28738690-28738757)
chr6 (32-87)||(28738808-28738863)
[»] chr1 (2 HSPs)
chr1 (20-87)||(2732633-2732700)
chr1 (21-78)||(28122007-28122063)
[»] chr3 (1 HSPs)
chr3 (20-72)||(46221721-46221773)
[»] chr4 (1 HSPs)
chr4 (39-72)||(56061640-56061673)
[»] chr8 (2 HSPs)
chr8 (47-87)||(10228655-10228695)
chr8 (31-87)||(33102338-33102394)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 33629525 - 33629690
Alignment:
Q  20 agttagctactgttggggttaaatgtgtaatttccatgtgttttcaagcaaaatctgaaatgggaacagccgaacagcaatgttttcgttgagttttctt 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33629525 agttagctaccgttggggttaaatgtgtaatttccatgtgttttcaagcaaaatctgaaatgggaacagccgaacagcaatgttttcgttaagttttctt 33629624  T
Q  120 aaatatacttgagcaataagctaggtccaaataaactggaaataagcttctaaacgcgcacctctatc 187  Q
    ||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  33629625 aa--atacttgagcaataagataggtccaaataaactggaaataagcttctacacgcgcacctctatc 33629690  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 38909037 - 38909105
Alignment:
Q  20 agttagctactgttggggttaaatgtgtaa-tttccatgtgttttcaagcaaaatctgaaatgggaaca 87  Q
    |||||||||||||||||||||||||| ||| |||  |||||||||||| ||||||||||| ||||||||    
T  38909037 agttagctactgttggggttaaatgtttaattttttatgtgttttcaaacaaaatctgaagtgggaaca 38909105  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 36941435 - 36941475
Alignment:
Q  38 ttaaatgtgtaatttccatgtgttttcaagcaaaatctgaa 78  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  36941435 ttaaacgtgtaatttccatgtgtttttaagcaaaatctgaa 36941475  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 36944514 - 36944457
Alignment:
Q  22 ttagctactgttggggttaaatgtgtaatttccatgtgttttcaagcaaaatctgaaa 79  Q
    |||||||||||||  ||||||| |||||||| ||  ||||||||||||||| ||||||    
T  36944514 ttagctactgttgatgttaaatatgtaattttcacatgttttcaagcaaaaactgaaa 36944457  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 28738757 - 28738690
Alignment:
Q  20 agttagctactgttggggttaaatgtgtaatttccatgtgttttcaagcaaaatctgaaatgggaaca 87  Q
    |||||||||  |||| ||||||||||||||||| |||||||||| |||| ||| ||||||||||||||    
T  28738757 agttagctatcgttgaggttaaatgtgtaattttcatgtgtttttaagcgaaaactgaaatgggaaca 28738690  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 28738808 - 28738863
Alignment:
Q  32 ttggggttaaatgtgtaatttccatgtgttttcaagcaaaatctgaaatgggaaca 87  Q
    |||| ||| |||||||||||| |||||||||||||| |||| ||||| ||||||||    
T  28738808 ttggagtttaatgtgtaattttcatgtgttttcaagtaaaaactgaagtgggaaca 28738863  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 2732700 - 2732633
Alignment:
Q  20 agttagctactgttggggttaaatgtgtaatttccatgtgttttcaagcaaaatctgaaatgggaaca 87  Q
    ||||| |||||||||  |||||||||||||||| ||||||||||||| ||||| || || ||||||||    
T  2732700 agttaactactgttgaagttaaatgtgtaattttcatgtgttttcaaacaaaaactaaagtgggaaca 2732633  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 28122007 - 28122063
Alignment:
Q  21 gttagctactgttggggttaaatgtgtaatttccatgtgttttcaagcaaaatctgaa 78  Q
    ||||||||  ||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  28122007 gttagctatcgttggggttaaatgtataatttctatgtg-tttcaagcaaaatctgaa 28122063  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 46221721 - 46221773
Alignment:
Q  20 agttagctactgttggggttaaatgtgtaatttccatgtgttttcaagcaaaa 72  Q
    ||||||||||||||  ||| |||||||||||||| |||||||||| |||||||    
T  46221721 agttagctactgttatggtcaaatgtgtaatttctatgtgttttctagcaaaa 46221773  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 56061673 - 56061640
Alignment:
Q  39 taaatgtgtaatttccatgtgttttcaagcaaaa 72  Q
    |||||||||||||| |||||||||||||||||||    
T  56061673 taaatgtgtaattttcatgtgttttcaagcaaaa 56061640  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 10228655 - 10228695
Alignment:
Q  47 taatttccatgtgttttcaagcaaaatctgaaatgggaaca 87  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
T  10228655 taatttccatgtgttttcaagcaaaaactgaactggaaaca 10228695  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 33102338 - 33102394
Alignment:
Q  31 gttggggttaaatgtgtaatttccatgtgttttcaagcaaaatctgaaatgggaaca 87  Q
    |||||| |||||| |||||| |  |||||||||||||||||||||||| ||| ||||    
T  33102338 gttgggattaaatatgtaatcttgatgtgttttcaagcaaaatctgaagtggaaaca 33102394  T

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