View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_514 (Length: 205)
Name: NF6867A_low_514
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_514 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr1 (5 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 38251824 - 38251995
Alignment:
| Q |
34 |
agattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaaga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38251824 |
agattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaaga |
38251923 |
T |
|
| Q |
134 |
tttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38251924 |
tttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt |
38251995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 43157718 - 43157547
Alignment:
| Q |
34 |
agattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaaga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157718 |
agattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaaga |
43157619 |
T |
|
| Q |
134 |
tttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43157618 |
tttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt |
43157547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 38251996 - 38252072
Alignment:
| Q |
130 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38251996 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt |
38252072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 43157546 - 43157470
Alignment:
| Q |
130 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43157546 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt |
43157470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 7e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 11475142 - 11474971
Alignment:
| Q |
34 |
agattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11475142 |
agattcagtaaaagctcaaactcctataggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaaga |
11475043 |
T |
|
| Q |
134 |
tttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11475042 |
tttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt |
11474971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 11503182 - 11503011
Alignment:
| Q |
34 |
agattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaaga |
133 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11503182 |
agattcagtaaaagctcaaactcctattggcagacagtcaagttcaacaggctacaatccagtagagttaacacacaatccaaaaacaaaagaatcaaga |
11503083 |
T |
|
| Q |
134 |
tttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11503082 |
tttgttacacactctaaaattatgctagcaaaatagaaacgaacaaatgacagaggctgctataacacaatt |
11503011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 11474970 - 11474894
Alignment:
| Q |
130 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11474970 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt |
11474894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 11503010 - 11502934
Alignment:
| Q |
130 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11503010 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaatt |
11502934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 28245195 - 28245236
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
28245195 |
aaatagaaacaaacaaatgacagaggctgctataacacaatt |
28245236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 22490436 - 22490477
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22490436 |
aaatacaaacgaacaaatgacagaggctgctataacacaatt |
22490477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 10123422 - 10123463
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
10123422 |
aaatagaaacgaacaaatgatagaggctgctataacacaatt |
10123463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 19306850 - 19306891
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
19306850 |
aaatagaaacgaacaaatgatagaggctgctataacacaatt |
19306891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 18330745 - 18330801
Alignment:
| Q |
97 |
agagttaacacacaatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
153 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||| ||||||| ||||| ||||||| |
|
|
| T |
18330745 |
agagttaaaacacaataaaaaaacaaaagcatcaacatttgttgcacacactaaaat |
18330801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 25382990 - 25382949
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
25382990 |
aaatagaatcgaacaaatgacagaggctgctataacacaatt |
25382949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 48795569 - 48795528
Alignment:
| Q |
164 |
aaatagaaacgaacaaatgacagaggctactataacacaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
48795569 |
aaatagaaacgaacaaatgacagaggttgttataacacaatt |
48795528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University