View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_515 (Length: 205)
Name: NF6867A_low_515
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_515 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 43735571 - 43735706
Alignment:
| Q |
50 |
agacaaagaaaaagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccatcatcaaaatc |
149 |
Q |
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| T |
43735571 |
agacaaagaaaaagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccatcatcaaaatc |
43735670 |
T |
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| Q |
150 |
attcccatttggtcttcaagtatcatggtgtcagtt |
185 |
Q |
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| T |
43735671 |
attcccatttggtcttcaagtatcatggtgtcagtt |
43735706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 43703530 - 43703608
Alignment:
| Q |
61 |
aagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccat |
139 |
Q |
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| T |
43703530 |
aagatatagcctcagatggttcagcgataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccat |
43703608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 43714501 - 43714579
Alignment:
| Q |
61 |
aagatatagcctctgatggatcagcctcaaagagatggaatctatgtacaatagatcaagttgaagagctaaaagccat |
139 |
Q |
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| T |
43714501 |
aagatatagcctcagatggttcagcgataaatcgttggagtctatgcacagtagatcaagttgaagaactaaaagccat |
43714579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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