View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_518 (Length: 202)
Name: NF6867A_low_518
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_518 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 2490239 - 2490138
Alignment:
| Q |
58 |
taaactcaacattaaacaaaatgttaaataggcttagaagtttaatctcaccttttaaagttaactcaaaggatgaggatgtccattttacaagcgcgcg |
157 |
Q |
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| T |
2490239 |
taaactcaacattaaacaaaatgttaaataggcttagaagtttaatctcaccttttaaagttaactctaaggatgaggatgtccattttacaagcgcgcg |
2490140 |
T |
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| Q |
158 |
cg |
159 |
Q |
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|| |
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| T |
2490139 |
cg |
2490138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 2490296 - 2490261
Alignment:
| Q |
20 |
atatgagccttccctaagtttagttatacttaataa |
55 |
Q |
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| T |
2490296 |
atatgagccttccctaagtttagttatacttaataa |
2490261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 2496702 - 2496658
Alignment:
| Q |
55 |
agataaactcaacattaaacaaaatgttaaataggcttagaagtt |
99 |
Q |
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||||||| ||||||||||||||| |||||||| | |||||||||| |
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| T |
2496702 |
agataaattcaacattaaacaaagtgttaaatggacttagaagtt |
2496658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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