View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_519 (Length: 202)
Name: NF6867A_low_519
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_519 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 31557026 - 31557174
Alignment:
| Q |
54 |
agacatcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttaca |
153 |
Q |
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| T |
31557026 |
agacatcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttaca |
31557125 |
T |
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| Q |
154 |
atgccccactttgtaataataggttacacaattcctaagggaatgaagg |
202 |
Q |
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| T |
31557126 |
atgccccactttgtaataataggttacacaattcctaagggaatgaagg |
31557174 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 31557330 - 31557296
Alignment:
| Q |
20 |
ataagcaactgaagagtgcagtgtaactcaacata |
54 |
Q |
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| T |
31557330 |
ataagcaactgaagagtgtagtgtaactcaacata |
31557296 |
T |
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