View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_523 (Length: 202)

Name: NF6867A_low_523
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_523
NF6867A_low_523
[»] chr4 (16 HSPs)
chr4 (17-188)||(27514412-27514584)
chr4 (18-188)||(27468777-27468957)
chr4 (17-188)||(27524043-27524223)
chr4 (17-188)||(27503444-27503622)
chr4 (110-188)||(27508487-27508565)
chr4 (18-187)||(27476011-27476187)
chr4 (25-107)||(27489638-27489718)
chr4 (28-74)||(27556962-27557008)
chr4 (17-76)||(27508427-27508486)
chr4 (17-77)||(27506265-27506325)
chr4 (17-77)||(27479399-27479459)
chr4 (17-67)||(27497858-27497908)
chr4 (22-79)||(27526689-27526747)
chr4 (114-171)||(27466189-27466246)
chr4 (32-77)||(27486459-27486504)
chr4 (114-178)||(27517369-27517433)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 27514412 - 27514584
Alignment:
Q  17 gacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgacatct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27514412 gacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgacatct 27514511  T
Q  117 catttggtagcaagtggaagctttgtattggacattt-tttaagaaggtagggtacactcttagacaacacca 188  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27514512 catttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca 27514584  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 27468957 - 27468777
Alignment:
Q  18 acatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg------- 110  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  27468957 acatcggcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgcacttga 27468858  T
Q  111 --acatctcatttggtagcaagtggaagctttgtattggacattt-tttaagaaggtagggtacactcttagacaacacca 188  Q
      ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27468857 gcacatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca 27468777  T

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Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 27524043 - 27524223
Alignment:
Q  17 gacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg------ 110  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||||| | ||          
T  27524043 gacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaaggaaaccaattaaatcatgaagaaatatgacgttgcacttg 27524142  T
Q  111 ---acatctcatttggtagcaagtggaagctttgtattggacattttttaagaaggtagggtacactcttagacaacacca 188  Q
       ||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||    
T  27524143 agcacatctcatttggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacacca 27524223  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 27503444 - 27503622
Alignment:
Q  17 gacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggc-------- 108  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||     || | |||||||||||||| |||||||||||            
T  27503444 gacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat---tgacgctaattaaatcatgaacaaatatgaggctatacttg 27503540  T
Q  109 -tgacatctcatttggtagcaagtggaagctttgtattggacattttttaag-aaggtagggtacactcttagacaacacca 188  Q
     | |||||| ||||  ||||||||||||||||||||||||||||| |||| | ||||||||| ||||||| |||||||||||    
T  27503541 atcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacacca 27503622  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 27508487 - 27508565
Alignment:
Q  110 gacatctcatttggtagcaagtggaagctttgtattggacattttttaagaaggtagggtacactcttagacaacacca 188  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  27508487 gacatctcatttggtaggaagtggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcacca 27508565  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 27476187 - 27476011
Alignment:
Q  18 acatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg------- 110  Q
    ||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||  |   | | |||||||||||||| ||||||||||||            
T  27476187 acatcggcattatcataatgaagaaaacatgtctgaagcatgcttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatacttga 27476091  T
Q  111 --acatctcatttggtagcaagtggaagctttgtattggacattttttaag-aaggtagggtacactcttagacaacacc 187  Q
      |||||| ||||  ||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||    
T  27476090 tcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacacc 27476011  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 27489638 - 27489718
Alignment:
Q  25 cattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgagg 107  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||  ||||  |||||||||  |||||| ||||||||||    
T  27489638 cattttcataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagt--accaattaatgcatgaataaatatgagg 27489718  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 27557008 - 27556962
Alignment:
Q  28 tatcataatgcagaaaacatgtctaaagcatgtttacaaaattatga 74  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  27557008 tatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 27556962  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 27508427 - 27508486
Alignment:
Q  17 gacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaag 76  Q
    |||||||||||| |||||||| |||||||||||||  |||||||||| ||||||||||||    
T  27508427 gacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaag 27508486  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 27506265 - 27506325
Alignment:
Q  17 gacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagt 77  Q
    |||||||||| | | |||||| ||||||||||||| || ||||||||||||||||||||||    
T  27506265 gacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagt 27506325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 27479459 - 27479399
Alignment:
Q  17 gacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagt 77  Q
    ||||||||||  || |||||| ||||||||||||| || |||||||||| |||||||||||    
T  27479459 gacatcagcaccatgataatgaagaaaacatgtctgaaacatgtttacacaattatgaagt 27479399  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 27497908 - 27497858
Alignment:
Q  17 gacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaa 67  Q
    ||||||| ||||||||||||| ||||||||||||  |||| ||||||||||    
T  27497908 gacatcaacattatcataatgaagaaaacatgtcctaagcctgtttacaaa 27497858  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 27526689 - 27526747
Alignment:
Q  22 cagcattatcataatgcagaaaa-catgtctaaagcatgtttacaaaattatgaagtac 79  Q
    |||||||||||||||| |||||| ||||||| ||  |||||| ||||||||||||||||    
T  27526689 cagcattatcataatgaagaaaaacatgtctgaacaatgttttcaaaattatgaagtac 27526747  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 27466246 - 27466189
Alignment:
Q  114 tctcatttggtagcaagtggaagctttgtattggacattttttaagaaggtagggtac 171  Q
    ||||||||||| ||||||||| ||||| |||||| |||||| | ||||||| ||||||    
T  27466246 tctcatttggttgcaagtggatgctttatattggccattttcttagaaggtggggtac 27466189  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 27486504 - 27486459
Alignment:
Q  32 ataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagt 77  Q
    |||||| ||||||||||||| || |||||||||| |||||||||||    
T  27486504 ataatgaagaaaacatgtctgaaacatgtttacacaattatgaagt 27486459  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 27517369 - 27517433
Alignment:
Q  114 tctcatttggtagcaagtggaagctttgtattggacattttttaagaaggtagggtacactctta 178  Q
    ||||| |||||  |||||||||||||||| |||| |||| ||| ||||||| ||||||| |||||    
T  27517369 tctcaattggttccaagtggaagctttgtgttggccattgtttgagaaggtggggtacaatctta 27517433  T

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