View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_55 (Length: 390)

Name: NF6867A_low_55
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_55
NF6867A_low_55
[»] chr3 (2 HSPs)
chr3 (1-226)||(49123946-49124171)
chr3 (219-384)||(49124225-49124390)
[»] chr4 (1 HSPs)
chr4 (60-167)||(4271421-4271528)
[»] chr1 (1 HSPs)
chr1 (60-167)||(2807765-2807872)
[»] chr6 (2 HSPs)
chr6 (320-368)||(11683218-11683266)
chr6 (320-379)||(18988416-18988475)
[»] chr8 (1 HSPs)
chr8 (320-379)||(30341290-30341349)
[»] chr5 (1 HSPs)
chr5 (320-379)||(23917049-23917108)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 49123946 - 49124171
Alignment:
Q  1 aagaaactttggtgaataaaatactttgtggaagaagataaaatatatagtaaattcagttttttaccttggcattgaagtttgcatctaaaagaatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49123946 aagaaactttggtgaataaaatactttgtggaagaagataaaatatatagtaaattcagttttttaccttggcattgaagtttgcatctaaaagaatatt 49124045  T
Q  101 tgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatatgttaagtgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124046 tgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatatgttaagtgt 49124145  T
Q  201 gttaacatagattttaatattcataa 226  Q
    ||||||||||||||||||||||||||    
T  49124146 gttaacatagattttaatattcataa 49124171  T

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Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 219 - 384
Target Start/End: Original strand, 49124225 - 49124390
Alignment:
Q  219 attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124225 attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag 49124324  T
Q  319 ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaag 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49124325 ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccttaactacattccaag 49124390  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 4271528 - 4271421
Alignment:
Q  60 ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta 159  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||  |||||| || |||||||| ||||||| ||    
T  4271528 ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta 4271429  T
Q  160 atcctctg 167  Q
    | ||||||    
T  4271428 aacctctg 4271421  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 2807872 - 2807765
Alignment:
Q  60 ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta 159  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||  |||||| || |||||||| ||||||| ||    
T  2807872 ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta 2807773  T
Q  160 atcctctg 167  Q
    | ||||||    
T  2807772 aacctctg 2807765  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 11683218 - 11683266
Alignment:
Q  320 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagcc 368  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  11683218 tgtaattttgaattttgtatactaggttaaagttgtgattgaaatagcc 11683266  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 18988416 - 18988475
Alignment:
Q  320 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt 379  Q
    |||||||||||| |||| | |||||||||| ||||| ||||||| |||| ||||||||||    
T  18988416 tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacatt 18988475  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 30341349 - 30341290
Alignment:
Q  320 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt 379  Q
    |||||||||||| |||||| |||||||||| ||||| ||||||| |||| ||||||||||    
T  30341349 tgtaattttgaactttgtaaacttggttaaagttgtaattgaaatagccttaactacatt 30341290  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 23917108 - 23917049
Alignment:
Q  320 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt 379  Q
    |||||||||||| |||| | |||||||||| ||||| ||||||| |||| ||||||||||    
T  23917108 tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacatt 23917049  T

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