View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_56 (Length: 390)
Name: NF6867A_low_56
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 31 - 368
Target Start/End: Complemental strand, 3015909 - 3015575
Alignment:
| Q |
31 |
catggttctgtgacttcttggtttacctgcatgaatagttcacttgaatatatgtatggcaacatgaaatgccttgaagaaaaaggcatcaacaaacaaa |
130 |
Q |
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| T |
3015909 |
catggttctgtgacttctttgtttacctgcatgaatagttcacttgaatatatgtatggcaacatgaaatgccttgaagaaaaaggcaccaacaaacaaa |
3015810 |
T |
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| Q |
131 |
ttcccattttctgctgctagctcatgcagcatgttccttgacatatcagaatgcataaaatctaatactctctaagattctttgtttaataacgatgatg |
230 |
Q |
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| T |
3015809 |
ttcccattttctgctgctagctcatgcagcatgttccttgacatttcagaatgcataaaatctaatactctctaagattctttgtttaataacgatgatg |
3015710 |
T |
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| Q |
231 |
atgacgacgacgactttgaccttttaattctacagaaacaagtgaggtagaattgacatcaacaatggaaacaggagcacgatgacgaggacgatagcaa |
330 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015709 |
at---gatgacgactttgaccttttaattctacagaaacaagtgaggtagaattgacatcaacaatggaaacaggagcacgatgacgaggacgatagcaa |
3015613 |
T |
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| Q |
331 |
gaagtatgacataacaagtccatttccttgaatccttt |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3015612 |
gaagtatgacataacaagtccatttccttgaatccttt |
3015575 |
T |
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