View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6867A_low_60 (Length: 387)
Name: NF6867A_low_60
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_60 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 6 - 366
Target Start/End: Original strand, 6538609 - 6538968
Alignment:
| Q |
6 |
acaaaacaactttctctctatgtaaaacttcatgcatctatcaccaatcaattactctgctactactttcaaacacttcaattttcactctttcatggat |
105 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6538609 |
acaaaacaactttctctctatgtacaacttcatgcatctatcaccaatcaattactctgctactactttcaaacacttcaattttcactctttcatggat |
6538708 |
T |
|
| Q |
106 |
ttttatagttttaacacaatgttatattatactattgaaatcaatgtaaactgtaagtgaccannnnnnnaagaaaagtgaactcatttcgtgacacaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6538709 |
ttttatagttttaacacaatgttatattatactattgaaatcaatgtat-ctgtaagtgaccatttttttaagaaaagtgaactcatttcgtgacacaat |
6538807 |
T |
|
| Q |
206 |
attagcaaaaaggtacatgtaccttttttattacggaggaagtatatgttatgagttatgacttacactcatgacatgagccgcatgacttcattatcac |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6538808 |
attagcaaaaaggtacatgtactttttttattacggaggaagtatatgttatgagttatgacttacactcatgacatgagccacatgacttcattatcac |
6538907 |
T |
|
| Q |
306 |
atttaacattttatctactctttcttctttcaagtcttcactaatctttcactattcaatg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
6538908 |
atttaacattttatctactctttcttctttgaagtcttcactaatctgtcactattcaatg |
6538968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University