View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_61 (Length: 386)
Name: NF6867A_low_61
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 13656119 - 13655764
Alignment:
| Q |
10 |
gatgaaaattgcaaagagcaaagtcggttgcaggggtgctaacttgaaagtgttaacatattaataagtgttaaaagtgacattcttaaggtacttatta |
109 |
Q |
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| T |
13656119 |
gatgaaaattgcaaagagcaaagtcggttgcaggggtgttaacttgaaagtgttaacatattaataagtgttaaaagtgacattcttaaggtacttatta |
13656020 |
T |
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| Q |
110 |
atatgacaatttttatgagacaaaaatattttttataatacaatagacaaaaagcactattgatgaaagattggtaaggtacttattaataagtctgcca |
209 |
Q |
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| T |
13656019 |
atatgacaatttttatgagacaaaaatattttttataatacaatagacaaaatgcactattgatgaaagattggtaaggtacttattaataagtctgcca |
13655920 |
T |
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| Q |
210 |
acctacctgaaacacacattgaatagcaattaaagcacaagaatgggacacaaagaagagtcaagaagaacaatggaagaaatatcatcaaatcaagaag |
309 |
Q |
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| T |
13655919 |
acctacctgaaacacacattgaatagcaattaaagcacaagaatgggacacaaagaagagtcaagaagaacaatggaagaaatatcaccaaatcaagaag |
13655820 |
T |
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| Q |
310 |
aagaggttacaaatgagaggagtgccactttttatctttaccatccatgttcatta |
365 |
Q |
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| T |
13655819 |
aagaggttacaaatgagaggagtgccactttttatctttaccatccatgttcatta |
13655764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 116 - 361
Target Start/End: Complemental strand, 13661409 - 13661169
Alignment:
| Q |
116 |
caatttttatgagacaaaaatattttttataatacaatagacaaaaagcactattgatgaaagattggtaaggtacttattaataagtctgccaacctac |
215 |
Q |
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| T |
13661409 |
caatttttatgagactaaattattttttatagtacaatagataaaatgcaccattgatgaaagattggtaaggtacttattaataagcctaccaactcac |
13661310 |
T |
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| Q |
216 |
ctgaaacacacattgaatagcaattaaagcacaagaatgggacacaaagaagagtcaagaagaacaatggaagaaatatcatcaaatcaagaagaagagg |
315 |
Q |
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| T |
13661309 |
ctgaaacacacatcgaatagcaattaaagcacaagaatggg-----aataagagtcaagaagaacaatggaagaaacatcaccaaatcaagaagcagagg |
13661215 |
T |
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| Q |
316 |
ttacaaatgagaggagtgccactttttatctttaccatccatgttc |
361 |
Q |
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| T |
13661214 |
tttcaaatgagaggagtgccactttttatcttcaccatccatgttc |
13661169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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