View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_66 (Length: 380)
Name: NF6867A_low_66
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 41792983 - 41793304
Alignment:
| Q |
19 |
gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg |
118 |
Q |
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| T |
41792983 |
gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg |
41793082 |
T |
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| Q |
119 |
cattttcgaaacaaccaacctactagaaacacgcttcccaccaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac |
218 |
Q |
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| T |
41793083 |
cattttcgaaacaaccaacctactagaaacacgcttcccaccaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac |
41793182 |
T |
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| Q |
219 |
agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatccggatcacggcggcgcgtgtcagaaatctcgataatcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41793183 |
agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatccggatcacggcggcgcgtgtcagaaatctcgataatcc |
41793282 |
T |
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| Q |
319 |
tctcctcatctccagccacagg |
340 |
Q |
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|||||||||||||||||||||| |
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| T |
41793283 |
tctcctcatctccagccacagg |
41793304 |
T |
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