View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6867A_low_81 (Length: 364)
Name: NF6867A_low_81
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6867A_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 5053629 - 5053986
Alignment:
| Q |
1 |
atttgaatcaatttctgaaaactatacaactactattgtcccttgacggtgacaaaactaatactaccaactatagattatatatagtggttctagttat |
100 |
Q |
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| T |
5053629 |
atttgaatcaatttctgaaaactatacaactactattgtccctcgacggtggcaaaactaatactaccaactatagattatatatagtggttctagttac |
5053728 |
T |
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| Q |
101 |
gttgcaaacctttatattgcagaaaaatgcaggaataagatgtcaaaattgcggttgcaatactgttgtggagactttaaaatcccttatattacagtgg |
200 |
Q |
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| T |
5053729 |
gttgcaaacctttatattgcagaaaaatgcgggaataagatgtcaaaattgcggttgcaatactgttgtggagactttaaaatcccttatattacagtgg |
5053828 |
T |
|
| Q |
201 |
caatactgttgcggaggcttcaaaatcccttatattaccgtggcaatactgttgcggagacttcaaaatccttgatactgcagttgcaatagtggttact |
300 |
Q |
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| T |
5053829 |
caatactgttgtggaggcttcaaaatcccttatattaccgtggcaatactgttgcggagacttcaaaatccttgatactgcagttgcaatagtggttact |
5053928 |
T |
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| Q |
301 |
gatactattggagagacttcaaaatcttttatatcatcgcaattgcgcttgcagaaaa |
358 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
5053929 |
gatactattggagagacttcaaaatcttttatatggtggcaattgcgcttgcagaaaa |
5053986 |
T |
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