View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6867A_low_89 (Length: 357)

Name: NF6867A_low_89
Description: NF6867A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6867A_low_89
NF6867A_low_89
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-357)||(5359-5715)
[»] chr8 (2 HSPs)
chr8 (246-291)||(10309271-10309316)
chr8 (245-287)||(29308810-29308852)
[»] chr1 (2 HSPs)
chr1 (249-287)||(27528309-27528347)
chr1 (255-291)||(34105867-34105903)
[»] chr2 (3 HSPs)
chr2 (247-290)||(15819925-15819968)
chr2 (248-290)||(34312085-34312127)
chr2 (247-289)||(36922674-36922716)
[»] chr5 (2 HSPs)
chr5 (245-287)||(9411394-9411436)
chr5 (247-287)||(14270853-14270893)
[»] chr4 (1 HSPs)
chr4 (246-290)||(54676943-54676987)


Alignment Details
Target: scaffold0096 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 5715 - 5359
Alignment:
Q  1 aatatgcaagggtcaggattcaaacctcatatttcccatttattctcacttaaggtgtgtgagtctatccagtaggccacttgaccaaatttggaagaac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5715 aatatgcaagggtcgggattcaaacctcatatttcccatttattcccacttaagatgtgtgagtctatccagtaggccacttgaccaaatttggaagaac 5616  T
Q  101 tattttcactttttccttttcaatacatgcgtatacttaaataaacgagtaaataatcatttgggtccatgaatatggaaggtgacgaacgtcactataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5615 tattttcactttttccttttcaatacatgcgtatacttaaataaacgagtaaataatcatttgggtccatgaatatggaaggtgacggacgtcactataa 5516  T
Q  201 tcatgactataatccttgtcgaacgtatttaaattacaaacagtttggatttcgatcctctccaaccatttctctcatgctgtttgttctaatgtctctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||    
T  5515 tcatgactataatccttgtcgaacgtatttaaattacaaacagtttggatttagatcctctccaaccatttctctcataatgtttgttctaatgtctctt 5416  T
Q  301 ttgctaatcagtttggtctgaaatgcatcttttgtgttggtcaatttggtgtgtaaa 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5415 ttgctaatcagtttggtctgaaatgcatcttttgtgttggtcaatttggtgtgtaaa 5359  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 10309316 - 10309271
Alignment:
Q  246 tggatttcgatcctctccaaccatttctctcatgctgtttgttcta 291  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  10309316 tggatttggatcctctccaaccatttctctcatgttgtttgttcta 10309271  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 29308852 - 29308810
Alignment:
Q  245 ttggatttcgatcctctccaaccatttctctcatgctgtttgt 287  Q
    |||||||| |||||||||||||||||||||| ||| |||||||    
T  29308852 ttggatttggatcctctccaaccatttctcttatgttgtttgt 29308810  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 27528347 - 27528309
Alignment:
Q  249 atttcgatcctctccaaccatttctctcatgctgtttgt 287  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  27528347 atttcgatcctctccaaccatttctctcatgttgtttgt 27528309  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 34105867 - 34105903
Alignment:
Q  255 atcctctccaaccatttctctcatgctgtttgttcta 291  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  34105867 atcctctccgaccatttctctcatgcagtttgttcta 34105903  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 15819968 - 15819925
Alignment:
Q  247 ggatttcgatcctctccaaccatttctctcatgctgtttgttct 290  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||    
T  15819968 ggatttggatcctctccaaccatttctctaatgttgtttgttct 15819925  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 34312127 - 34312085
Alignment:
Q  248 gatttcgatcctctccaaccatttctctcatgctgtttgttct 290  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||    
T  34312127 gatttggatcctctccaaccatttcgctcatgttgtttgttct 34312085  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 36922716 - 36922674
Alignment:
Q  247 ggatttcgatcctctccaaccatttctctcatgctgtttgttc 289  Q
    |||||| ||| |||||||||||||||||||||| |||||||||    
T  36922716 ggatttggattctctccaaccatttctctcatgttgtttgttc 36922674  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 9411436 - 9411394
Alignment:
Q  245 ttggatttcgatcctctccaaccatttctctcatgctgtttgt 287  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  9411436 ttggacttggatcctctccaaccatttctctcatgttgtttgt 9411394  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 14270893 - 14270853
Alignment:
Q  247 ggatttcgatcctctccaaccatttctctcatgctgtttgt 287  Q
    |||||| |||||||||||||||||||| ||||| |||||||    
T  14270893 ggatttggatcctctccaaccatttctttcatgttgtttgt 14270853  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 54676943 - 54676987
Alignment:
Q  246 tggatttcgatcctctccaaccatttctctcatgctgtttgttct 290  Q
    ||||||| |||||||||||||||||||||| |||  |||||||||    
T  54676943 tggatttagatcctctccaaccatttctcttatgtagtttgttct 54676987  T

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