View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_high_18 (Length: 372)

Name: NF6868A_high_18
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_high_18
NF6868A_high_18
[»] chr3 (6 HSPs)
chr3 (13-372)||(19199069-19199429)
chr3 (47-312)||(6777782-6778048)
chr3 (43-303)||(1596237-1596498)
chr3 (43-303)||(34437781-34438041)
chr3 (316-363)||(34437674-34437721)
chr3 (98-187)||(21565966-21566054)
[»] chr1 (8 HSPs)
chr1 (43-308)||(43782700-43782966)
chr1 (43-303)||(48999783-49000044)
chr1 (43-308)||(45152633-45152899)
chr1 (43-227)||(40553596-40553780)
chr1 (47-312)||(3375894-3376159)
chr1 (43-227)||(33297214-33297398)
chr1 (316-368)||(45152954-45153005)
chr1 (314-364)||(3375795-3375845)
[»] scaffold0018 (1 HSPs)
scaffold0018 (70-308)||(180324-180563)
[»] chr7 (3 HSPs)
chr7 (47-306)||(12627381-12627641)
chr7 (66-313)||(1326840-1327088)
chr7 (43-227)||(38457440-38457624)
[»] chr5 (11 HSPs)
chr5 (123-306)||(26653528-26653712)
chr5 (123-306)||(26925113-26925297)
chr5 (97-303)||(13274093-13274300)
chr5 (43-227)||(2742953-2743137)
chr5 (9-108)||(26648609-26648708)
chr5 (9-108)||(26920194-26920293)
chr5 (171-227)||(21101423-21101479)
chr5 (98-219)||(24209211-24209332)
chr5 (316-372)||(26653769-26653825)
chr5 (316-372)||(26925354-26925410)
chr5 (316-371)||(21101616-21101672)
[»] chr4 (11 HSPs)
chr4 (43-303)||(42705139-42705400)
chr4 (96-218)||(25147344-25147466)
chr4 (43-227)||(39465306-39465486)
chr4 (308-363)||(3681088-3681143)
chr4 (43-180)||(3680781-3680918)
chr4 (44-193)||(32307880-32308029)
chr4 (316-363)||(25147612-25147659)
chr4 (316-363)||(32305590-32305637)
chr4 (316-363)||(39465623-39465670)
chr4 (190-227)||(32305774-32305811)
chr4 (316-360)||(42705035-42705079)
[»] chr8 (3 HSPs)
chr8 (69-312)||(37227721-37227965)
chr8 (43-242)||(14096647-14096846)
chr8 (316-363)||(37227623-37227670)
[»] chr2 (4 HSPs)
chr2 (96-312)||(31116886-31117103)
chr2 (43-206)||(28035603-28035766)
chr2 (316-363)||(28035925-28035972)
chr2 (316-364)||(31116787-31116835)
[»] scaffold0251 (2 HSPs)
scaffold0251 (43-307)||(16977-17245)
scaffold0251 (316-363)||(16875-16922)
[»] scaffold0408 (1 HSPs)
scaffold0408 (43-242)||(6989-7188)
[»] chr6 (3 HSPs)
chr6 (87-227)||(6285814-6285954)
chr6 (123-240)||(35014337-35014454)
chr6 (98-188)||(2029728-2029818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (156-227)||(257345-257416)
[»] scaffold0010 (1 HSPs)
scaffold0010 (98-196)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 19199069 - 19199429
Alignment:
Q  13 tggacacaacatatatgacattgttttagcggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgc 112  Q
    ||||||||||| ||||| ||||| || || |||||||||||||||||||||   ||||||| ||||||||| |||||||||||||||| || ||||||||    
T  19199069 tggacacaacagatatgccattgattcagtggaccattctcatgtcatctggatgtcgtacgagagacaacgagacattacgtccttttagaacatatgc 19199168  T
Q  113 tagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggc 212  Q
    |||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| | ||| |||||||||    
T  19199169 tagtgctccggatggatcatggccggcaaatacaagagggtatgtcacttgccagagtgggttcttaggcagtactagtatgtccaaactgttcccaggc 19199268  T
Q  213 ctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatctagt 311  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |    
T  19199269 ctcctacaaacattgggcctcttacggcaggggacgtggttatggccttcgcagagtttgctctacatgtcctcagccagtaggagaggggtgatctatt 19199368  T
Q  312 tttgtagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttga 372  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  19199369 tttgtagagtatcacatcctattatgaacccccctgcgtccattcctgactacacagttga 19199429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 47 - 312
Target Start/End: Original strand, 6777782 - 6778048
Alignment:
Q  47 cattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaataca 146  Q
    ||||| ||||||| |||  || ||||| |||||| || | |||| ||| ||| | |||||||||||| || |||  ||||||||||||||| |||  |||    
T  6777782 cattcacatgtcacctggaggccgtacgagagacgacgacacatcacgccctataaggacatatgctggtgctccggatggatcatggccgacaacgaca 6777881  T
Q  147 agagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcagggga 246  Q
     || |||  ||||||||| | || ||||| |||||||||||| ||||||| |||||||||  ||| ||||||||||||||| || | || ||||||  ||    
T  6777882 ggatggtccgtcacttgctagagagggttcttaggcagtacgggtatgtccagactattctgagggctcctacagacattgagcttattgcggcagatga 6777981  T
Q  247 cgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatctagtt 312  Q
    ||| ||   ||||||| | |||||| ||||||||| ||||||||| ||| |||||||||||| ||||    
T  6777982 cgtggcccaggccttcacggagtttgctctacatgtcctcagccatcagcagaggggtgatccagtt 6778048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 303
Target Start/End: Complemental strand, 1596498 - 1596237
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||| ||| ||||||| |||  |||||||| |||||| || | |||| ||| |||||||||||||||||| ||||||  |||||||||||||| |||      
T  1596498 ggaccgttcacatgtcacctggaggtcgtacaagagacgacgacacatcacgccctttcaggacatatgctggtactccggatggatcatggccagcagc 1596399  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcag 242  Q
     ||| || |||  ||||||||||| || ||||| |||||||||||  ||||||| |||||||||  ||| ||||||||||||||| || | || ||||||    
T  1596398 gacaggatggtccgtcacttgccaaagcgggttcttaggcagtacaggtatgtccagactattctgagggctcctacagacattgagcttattgcggcag 1596299  T
Q  243 gggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggt 303  Q
      ||||| ||   |||||||   |||||| ||||||||| ||||| ||| ||| ||||||||    
T  1596298 atgacgtggcccaggccttcatggagtttgctctacatgtcctcacccatcagcagaggggt 1596237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 303
Target Start/End: Complemental strand, 34438041 - 34437781
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| ||||||| |||  || ||||| |||||| || | |||| ||| |||||||||||||||||| ||||||  |||||||||||| ||| |      
T  34438041 ggaccattcacatgtcacctggaggccgtacgagagacgacgacacatcacgccctttcaggacatatgctggtactccggatggatcatggtcggtagt 34437942  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcag 242  Q
      || || |||  |||| || ||| || ||||| |||||||||||| ||||||  |||||||||||||| ||||||| ||||||| || | || |||| |    
T  34437941 ggcaggatggtccgtcaatttccagagcgggttcttaggcagtacgggtatgtacagactattcccagggctcctactgacattgagcttattgcggcgg 34437842  T
Q  243 gggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggt 303  Q
      ||||| || | || |||| | |||||| ||||||||| ||||||||| ||||| ||||||    
T  34437841 atgacgtggcca-ggtcttcacggagtttgctctacatgtcctcagccatcaggataggggt 34437781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 34437721 - 34437674
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 363  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  34437721 tagagtatcacatcctattgtgaacctccctgcgcccattcctgacta 34437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 21565966 - 21566054
Alignment:
Q  98 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtac 187  Q
    ||||||||| | |||| ||||||| ||||||||||||||| |||| | |||| ||| |||||||||||  || ||||| | |||||||||    
T  21565966 tttcaggacgtgtgct-gtactctggatggatcatggccgacaaacaaaagatggtgtgtcacttgcccgagcgggttctgaggcagtac 21566054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 43 - 308
Target Start/End: Complemental strand, 43782966 - 43782700
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    |||||||||||||||||||||  |||| ||| |||||  || |||||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||    
T  43782966 ggaccattctcatgtcatctggaggtcatacgagagatgacgagacattacgccctttcacgacatatgctagtactctggatggatcatggtcggcaaa 43782867  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcag 242  Q
     ||| |||||| |||||||||||| || | ||| ||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||| || ||     
T  43782866 gacatgagggtctgtcacttgccagagcgagttcttaggcaatacgagtatgtccagactatacccatgcctcctacagacattgggcctcttgcgtcaa 43782767  T
Q  243 gggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatct 308  Q
    ||||||| |||||||||| |   |||||| ||||||||| |||||||||||||||||||||||||||    
T  43782766 gggacgtggctatggcctccatggagtttgctctacatgtcctcagccagcaggagaggggtgatct 43782700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 43 - 303
Target Start/End: Original strand, 48999783 - 49000044
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| ||||||| |||  |||||||| |||||| || | |||| ||| |||||||||||||||||| ||||||  |||||||||||||||||||     
T  48999783 ggaccattcacatgtcacctggaggtcgtacgagagacgacgacacatcacgccctttcaggacatatgctggtactccggatggatcatggccggcaac 48999882  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcag 242  Q
     ||| || |||  ||||||||||| || ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| || | || |||| |    
T  48999883 gacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgtctagactattcccagggctcctacagacattgagcttattgcggcgg 48999982  T
Q  243 gggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggt 303  Q
      ||||| |||  ||||||| | |||||| ||||||||| ||||||||| ||||| ||||||    
T  48999983 atgacgtggctcaggccttcacggagtttgctctacatgtcctcagccatcaggataggggt 49000044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 43 - 308
Target Start/End: Original strand, 45152633 - 45152899
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    |||||||| ||||||||||||   ||||||  |||||| |  | |||| ||| |||||||||||||||| | |||||| |||||||||||||||||||||    
T  45152633 ggaccattttcatgtcatctggatgtcgtatgagagacgatgacacatcacgccctttcaggacatatgttggtactccagatggatcatggccggcaaa 45152732  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcag 242  Q
     ||| | ||||   | |||||| | || ||||| ||||||||| || ||||||| ||||| |||| |||| |||||||||||||||||||||| || |||    
T  45152733 gacatgcgggttcattacttgctagagcgggttcttaggcagttcgggtatgtccagactgttcctaggcatcctacagacattgggcctcttgcgacag 45152832  T
Q  243 gggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatct 308  Q
     ||| || ||||||||||||   |||||| |||||||||  |||||||| | ||||| |||||||||    
T  45152833 cggatgtggctatggccttcatggagtttgctctacatgttctcagccaactggagatgggtgatct 45152899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 40553780 - 40553596
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| |||||||  ||  |||||||| |||||| || | |||| ||| ||||||| |||||||||| ||||||  ||||||||||||||||||      
T  40553780 ggaccattcacatgtcacttggaggtcgtacgagagacgacgacacatcacgccctttcatgacatatgctggtactccggatggatcatggccggcagc 40553681  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 227  Q
     ||| || |||  ||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  40553680 gacaggatggtccgtcacttgccagagcgggttcttaggcagtacgagtatgtccagactattcccagggctcctacagacattg 40553596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 47 - 312
Target Start/End: Complemental strand, 3376159 - 3375894
Alignment:
Q  47 cattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaataca 146  Q
    |||||||||||||| ||  || ||||| |||||| || ||||||  || |||||||||||||||  | ||||||  |||||||||||||||| | | |||    
T  3376159 cattctcatgtcatttggaggccgtacgagagacgacgagacatggcgccctttcaggacatattttggtactccggatggatcatggccggtagagaca 3376060  T
Q  147 agagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcagggga 246  Q
     || |||  ||||||||||| || ||||| ||||||| |||  ||||||| |||||  ||||||  |||||||||| ||||||||||||  | ||| |||    
T  3376059 ggatggtccgtcacttgccagagcgggttcttaggcaatacatgtatgtccagactggtcccagagctcctacagatattgggcctcttgtgccagagga 3375960  T
Q  247 cgtagctatggccttcgcagag-tttctctacatgccctcagccagcaggagaggggtgatctagtt 312  Q
     || |||||| |||||   ||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  3375959 ggtggctatgaccttcatggagttttctctacatgtcctcagccagcaggaga-gggtgatctagtt 3375894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 33297398 - 33297214
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| ||||||| |||  || ||||| |||||| || | |||| ||| | |||||||||||||||| ||||||  ||||||||||||||| ||      
T  33297398 ggaccattcacatgtcacctggaggccgtacgagagacgacgacacatcacgccatttcaggacatatgctggtactccggatggatcatggccgacagc 33297299  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 227  Q
     ||| || |||  ||||||||||| || ||||| |||||||||||| ||||| | |||||||||||||| |||||||||||||||    
T  33297298 gacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgaccagactattcccagggctcctacagacattg 33297214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 45152954 - 45153005
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacag 368  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||||||||||    
T  45152954 tagagtatcacatcctattgtgaacc-ccctgcggccattcctgactacacag 45153005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 3375845 - 3375795
Alignment:
Q  314 tgtagagtatcacatcctattatgaacctccatgcgtccattcctgactac 364  Q
    ||||||||| ||||||||||| |||||| || |||| ||||||||||||||    
T  3375845 tgtagagtagcacatcctattgtgaacccccctgcggccattcctgactac 3375795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 70 - 308
Target Start/End: Complemental strand, 180563 - 180324
Alignment:
Q  70 gtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatag 169  Q
    |||| |||||| || |||||||| | |||||||||||||||| | ||||||  ||||||||||||||| |||| ||| |||||| |||||||||||| ||    
T  180563 gtacgagagacgacgagacattatgccctttcaggacatatgttggtactccggatggatcatggccgccaaagacaggagggtctgtcacttgccagag 180464  T
Q  170 tgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagt 269  Q
     ||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||||| | |||||| |||||   ||||    
T  180463 cgggttcttaggcagtacgggtatgtctagactgttcccaggcctcctacaaacattgggcctcttgtggcaggggacatggctatgaccttcatggagt 180364  T
Q  270 tt-ctctacatgccctcagccagcaggagaggggtgatct 308  Q
    || ||||||||| |||||||||||||||||||||||||||    
T  180363 ttgctctacatgtcctcagccagcaggagaggggtgatct 180324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 47 - 306
Target Start/End: Original strand, 12627381 - 12627641
Alignment:
Q  47 cattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaataca 146  Q
    |||||||||||||||||  |||||||| || ||  || | |||| ||| ||||| |||||||||| | |||||||||||||||||||||||||||| |||    
T  12627381 cattctcatgtcatctgaaggtcgtacgagtgatgacgacacatgacgcccttttaggacatatggtggtactctagatggatcatggccggcaaagaca 12627480  T
Q  147 agagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcagggga 246  Q
     || |||  ||||||||||| |||||||| ||| |||||||  ||||| | ||||| |||||||||||||||||||||||||| || || || ||| ||     
T  12627481 ggatggttcgtcacttgccagagtgggttcttatgcagtacaggtatgcccagactgttcccaggcctcctacagacattgggactgttgcgccagaggc 12627580  T
Q  247 cgtagctatggccttcgcagag-tttctctacatgccctcagccagcaggagaggggtgat 306  Q
     || ||||||||||||   ||| |||||||||||| ||||||||| ||  |||||||||||    
T  12627581 ggtggctatggccttcatggagttttctctacatgtcctcagccaacaacagaggggtgat 12627641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 313
Target Start/End: Complemental strand, 1327088 - 1326840
Alignment:
Q  66 ggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgcc 165  Q
    |||||||| |||||| || |||||||||  |||||||||||||||| | ||||||  |||||||||||||| ||| | ||||||||||  ||||||||||    
T  1327088 ggtcgtacgagagacgacgagacattacaccctttcaggacatatgttggtactccggatggatcatggcctgcagagacaagagggtccgtcacttgcc 1326989  T
Q  166 atagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgca 265  Q
    | |  ||| | |||||||||| | ||||||| | | | ||| || ||||||||||||||||||||||||  || ||||||| || | || |||||||       
T  1326988 agaacgggattttaggcagtatgggtatgtccaaattgttcacatgcctcctacagacattgggcctctggcgccaggggaggtggttacggccttcatg 1326889  T
Q  266 gagttt-ctctacatgccctcagccagcaggagaggggtgatctagttt 313  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||| ||||    
T  1326888 gagtttgctctacatgtcctcagccaacaggagaggggtgatctggttt 1326840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 38457440 - 38457624
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| ||||||| |||  || ||||| |||||| || | |||| | | |||||||||||||||||| ||||||  ||||||||||||||||||      
T  38457440 ggaccattcacatgtcacctggaggacgtacgagagacgacgacacatcatgccctttcaggacatatgctggtactccggatggatcatggccggcagc 38457539  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 227  Q
     ||| || |||  ||||||||||| ||| |||| |||||||||||| |||| |  |||||||||||||  |||||||||||||||    
T  38457540 gacatgatggtccgtcacttgccagagttggttcttaggcagtacgggtatattcagactattcccagcgctcctacagacattg 38457624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 123 - 306
Target Start/End: Original strand, 26653528 - 26653712
Alignment:
Q  123 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 222  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
T  26653528 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26653627  T
Q  223 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 306  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
T  26653628 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 123 - 306
Target Start/End: Original strand, 26925113 - 26925297
Alignment:
Q  123 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 222  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
T  26925113 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26925212  T
Q  223 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 306  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
T  26925213 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26925297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 97 - 303
Target Start/End: Original strand, 13274093 - 13274300
Alignment:
Q  97 ctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtc 196  Q
    |||| |||||||||||| |||||| |||||||||||||||||||   ||| ||  ||  ||||||||||| || ||||| |||||||||||| |||||||    
T  13274093 cttttaggacatatgctggtactccagatggatcatggccggcagcgacaggattgtccgtcacttgccagagcgggttcttaggcagtacgggtatgtc 13274192  T
Q  197 tagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttctctacatgccctcagccagcagg 295  Q
     |||||||||||||| ||||||||| ||||| || | || |||  |  ||||| ||   ||||||| ||||| |||||||||||| ||||||||| ||||    
T  13274193 cagactattcccagggctcctacagccattgagcttattgcggtggatgacgtggcctaggccttcacagagttttctctacatgtcctcagccatcagg 13274292  T
Q  296 agaggggt 303  Q
    | ||||||    
T  13274293 ataggggt 13274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 2742953 - 2743137
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| ||||||| |||  || ||||| |||||| || | |||| ||| |||||||||||||||||| ||||||  ||||||||||| ||||||      
T  2742953 ggaccattcacatgtcacctggaggccgtacgagagacgacgacacatcacgccctttcaggacatatgctggtactccggatggatcatgaccggcagc 2743052  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 227  Q
     ||| || |||   ||||||| || || ||||| ||||| |||||| ||||||| | ||||||| |||| |||||||||||||||    
T  2743053 gacaggatggtccatcacttgtcagagcgggttcttaggaagtacgggtatgtccaaactattctcagggctcctacagacattg 2743137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 26648609 - 26648708
Alignment:
Q  9 atcctggacacaacatatatgacattgttttagcggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacat 108  Q
    ||||||||||| ||| | ||| ||||| || |  |||||||||||||||||||||  |||||||| |||||| || |||||||||| | |||||||||||    
T  26648609 atcctggacactacaaagatgccattgattcactggaccattctcatgtcatctggaggtcgtacgagagacgacgagacattacgccttttcaggacat 26648708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 26920194 - 26920293
Alignment:
Q  9 atcctggacacaacatatatgacattgttttagcggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacat 108  Q
    ||||||||||| ||| | ||| ||||| || |  |||||||||||||||||||||  |||||||| |||||| || |||||||||| | |||||||||||    
T  26920194 atcctggacactacaaagatgccattgattcactggaccattctcatgtcatctggaggtcgtacgagagacgacgagacattacgccttttcaggacat 26920293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 21101423 - 21101479
Alignment:
Q  171 gggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 227  Q
    ||||| |||||||||||| ||||||| |||||||||| ||| |||||||||||||||    
T  21101423 gggttcttaggcagtacgtgtatgtccagactattcctagggctcctacagacattg 21101479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 24209332 - 24209211
Alignment:
Q  98 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtct 197  Q
    |||| ||||||||||| ||||||  ||||||||||| ||| |||| ||| || |    ||||||||||| || ||||| | ||||||||||| |||| ||    
T  24209332 tttcgggacatatgctggtactccggatggatcatgaccgacaaagacaggatgtgccgtcacttgccagagcgggttctgaggcagtacgactatgcct 24209233  T
Q  198 agactattcccaggcctcctac 219  Q
    |||| |||| ||| ||||||||    
T  24209232 agaccattcacagacctcctac 24209211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 26653769 - 26653825
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttga 372  Q
    ||||||||||||||||||| |||||| || ||   ||||||||||||||||||||||    
T  26653769 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttga 26653825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 26925354 - 26925410
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttga 372  Q
    ||||||||||||||||||| |||||| || ||   ||||||||||||||||||||||    
T  26925354 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttga 26925410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 21101616 - 21101672
Alignment:
Q  316 tagagtatcacatcctattatgaacctccat-gcgtccattcctgactacacagttg 371  Q
    ||||||||| ||||||||| |||||| || | ||| |||||||||||||||||||||    
T  21101616 tagagtatcgcatcctattgtgaaccccccttgcggccattcctgactacacagttg 21101672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 303
Target Start/End: Complemental strand, 42705400 - 42705139
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| ||||||| |||  || ||||| |||||| || | |||| ||| |||||||||||||||| | ||||||  |||||||||||| |||||      
T  42705400 ggaccattcacatgtcacctggaggccgtacgagagacgacgacacatcacgccctttcaggacatatgttggtactccggatggatcatgggcggcagc 42705301  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcag 242  Q
     ||| || |||  ||||||||||| || ||||| |||||||||||| | ||||| | |||||||||||| ||||||||||||||| || | || || |||    
T  42705300 gacatgaaggtccgtcacttgccagagcgggttcttaggcagtacgggcatgtccatactattcccagggctcctacagacattgagcttattgcgacag 42705201  T
Q  243 gggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggt 303  Q
      ||||| ||   ||||||| | |||||| ||||||||| ||||||||| ||| ||||||||    
T  42705200 atgacgtggcccaggccttcacggagtttgctctacatgtcctcagccatcagcagaggggt 42705139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 25147344 - 25147466
Alignment:
Q  96 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 195  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||   ||| || ||| |||||||||||| || ||||| |||||||||||| ||||||    
T  25147344 cctttcaggacatatgctggtactccggatggatcatggccggcagcgacaggatggtctgtcacttgccagagcgggttcttaggcagtacgggtatgt 25147443  T
Q  196 ctagactattcccaggcctccta 218  Q
    | |||||||||||| | ||||||    
T  25147444 ccagactattcccatggctccta 25147466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 39465306 - 39465486
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| ||||||| |||  || ||||| |||||| ||  ||||| ||| |||||||||||||||||||||||||  ||||||||||||||||||      
T  39465306 ggaccattcacatgtcacctggaggccgtacgagagacgac--gacatcacgccctttcaggacatatgctagtactccggatggatcatggccggcagc 39465403  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 227  Q
     ||| || |||  || |||||||| ||  |||| |||||||||| | |||||||  |||||||| |||| || ||||||||||||    
T  39465404 gacaggatggtccgtaacttgccagagccggttcttaggcagtatgggtatgtc--gactattctcagggcttctacagacattg 39465486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 3681088 - 3681143
Alignment:
Q  308 tagttttgtagagtatcacatcctattatgaacctccatgcgtccattcctgacta 363  Q
    ||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  3681088 tagttttttagagtatcacatcctattatgaacccccctgcgaccattcctgacta 3681143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 3680781 - 3680918
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| ||||||| |||  || ||||| |||||| || | |||| ||| ||||| |||||| || |||||||||  ||||||||||||||||||      
T  3680781 ggaccattcacatgtcacctggaggccgtacgagagacgacgacacatcacgccctttgaggacacatactagtactccggatggatcatggccggcagc 3680880  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattag 180  Q
     |||||| |||  ||||||||||| || ||||| ||||    
T  3680881 gacaagatggtccgtcacttgccagagcgggttcttag 3680918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 32308029 - 32307880
Alignment:
Q  44 gaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaat 143  Q
    |||||||| ||||||| |||   ||||||| |||||| || | |||| ||| ||||| |||||||||||| ||||||  ||||||||||||||| ||       
T  32308029 gaccattcacatgtcacctggaagtcgtacgagagacgacgacacatcacgccctttgaggacatatgctggtactccggatggatcatggccgacagcg 32307930  T
Q  144 acaagagggtatgtcacttgccatagtgggttattaggcagtacgagtat 193  Q
    ||| || |||  ||||||||||  || ||||| |||||||||||| ||||    
T  32307929 acaggatggtccgtcacttgcctgagcgggttcttaggcagtacgggtat 32307880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 25147612 - 25147659
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 363  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  25147612 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 25147659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 32305637 - 32305590
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 363  Q
    ||||||||||||||||||| |||||| ||||| | |||||||||||||    
T  32305637 tagagtatcacatcctattgtgaacccccatgtggccattcctgacta 32305590  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 39465623 - 39465670
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 363  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  39465623 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 39465670  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 32305811 - 32305774
Alignment:
Q  190 gtatgtctagactattcccaggcctcctacagacattg 227  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  32305811 gtatgtccagactattcccagggctcctacagacattg 32305774  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 42705079 - 42705035
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctga 360  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||    
T  42705079 tagagtatcacatcctattgtgaacccccctgcggccattcctga 42705035  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 312
Target Start/End: Complemental strand, 37227965 - 37227721
Alignment:
Q  69 cgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccata 168  Q
    ||||| |||||| || | |||| ||| ||||| |||||||||||||||||||  ||||||||||||||| ||   ||| || |||   |||||||||| |    
T  37227965 cgtacgagagacgacgacacatcacgcccttttaggacatatgctagtactccggatggatcatggccgacatcgacaggatggtccctcacttgccaga 37227866  T
Q  169 gtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag 268  Q
    | ||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||||| || | || |||| |  ||||| ||   ||||||| | |||    
T  37227865 gcgggttcttaggcagtacgggtatgtccagactattcccagggctcctacagacattgagcttattgcggcggatgacgtggcccaggccttcacggag 37227766  T
Q  269 ttt-ctctacatgccctcagccagcaggagaggggtgatctagtt 312  Q
    ||| ||||||||| ||||||||| || || |||||| ||| ||||    
T  37227765 tttgctctacatgtcctcagccatcaagataggggtcatccagtt 37227721  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 14096647 - 14096846
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    |||||||||||||||||  ||  |  ||||| |||||| || | |||| | | |||||||||||||| |||||||||| |||||||||||||||| ||      
T  14096647 ggaccattctcatgtcacttggagaccgtacgagagacgacgacacataatgccctttcaggacataagctagtactccagatggatcatggccgacagc 14096746  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcag 242  Q
     |||  | |||  ||||||||||| || || || |||||||||||  ||||||| |||||||||||  ||||||||||||||||| || |||| ||||||    
T  14096747 gacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgtccagactattcccttgcctcctacagacattgagcttcttgcggcag 14096846  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 37227670 - 37227623
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 363  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  37227670 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 37227623  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 312
Target Start/End: Complemental strand, 31117103 - 31116886
Alignment:
Q  96 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 195  Q
    |||||||||| ||||||| |||||   ||||||||||||||| || | | | || ||| |||||||||||| ||| |||| |||||||||||| ||||||    
T  31117103 cctttcaggatatatgctggtacttcggatggatcatggccgacagagataggatggtctgtcacttgccagagtcggttcttaggcagtacgggtatgt 31117004  T
Q  196 ctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcag 294  Q
    | ||||    |||||||||||||||||||||  ||||||||||||||  ||||| ||   | |||||  ||||||| ||||||||| ||||||||| |||    
T  31117003 ccagacacggcccaggcctcctacagacattaagcctcttacggcagatgacgtggcccagaccttcatagagtttgctctacatgtcctcagccatcag 31116904  T
Q  295 gagaggggtgatctagtt 312  Q
     |||||||| ||| ||||    
T  31116903 cagaggggttatccagtt 31116886  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 28035603 - 28035766
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| ||||||| |||  || ||||| |||||| |||| |||| ||| ||||||| |||||||||| ||||||  ||| ||||||||||||||      
T  28035603 ggaccattcacatgtcacctggaggccgtacgagagacgacaacacatcacgccctttcaagacatatgctggtactccggatagatcatggccggcagc 28035702  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattc 206  Q
     ||| || |||  ||||||||| | || ||||| |||||||||| | ||||||| |||||||||    
T  28035703 gacatgatggtccgtcacttgctagagcgggttcttaggcagtaggggtatgtccagactattc 28035766  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 28035925 - 28035972
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 363  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  28035925 tagagtatcacatcctattgtgaacccccatgcggccattcctgacta 28035972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 31116835 - 31116787
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgactac 364  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||||||    
T  31116835 tagagtatcacatcctattgtgaacccccctgcggccattcctgactac 31116787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 307
Target Start/End: Complemental strand, 17245 - 16977
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    ||||||||| |||||||  ||  || ||||| |||||| || | |||| ||  |||||||||||||||||| ||||||| |||||||||||||| |||      
T  17245 ggaccattcacatgtcacttggaggccgtacgagagacgacgacacatcacaccctttcaggacatatgctggtactctggatggatcatggccagcagc 17146  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcag 242  Q
     ||| || |||  ||||||| ||| || ||||| ||||| |||||| ||||||| |||||||||| ||| ||||||||||||||  || | || ||||||    
T  17145 gacaggatggtccgtcactttccagagcgggttgttaggtagtacgggtatgtccagactattccgagggctcctacagacatttagcttattgcggcag 17046  T
Q  243 gggacgtag-cta--tggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgatc 307  Q
      ||| | | |||  || ||||| |||||||| ||||||||| ||||||||| ||| ||||||||||||    
T  17045 atgacatggcctaggtgcccttcacagagtttgctctacatgtcctcagccatcagtagaggggtgatc 16977  T

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Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 16922 - 16875
Alignment:
Q  316 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 363  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  16922 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 16875  T

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Target: scaffold0408 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 6989 - 7188
Alignment:
Q  43 ggaccattctcatgtcatctgttggtcgtaccagagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaa 142  Q
    |||||||||||||||||  ||  |  ||||| |||||| || | |||| | | |||||||||||||| |||||||||| |||||||||||||||| ||      
T  6989 ggaccattctcatgtcacttggagaccgtacgagagacgacgacacataatgccctttcaggacataagctagtactccagatggatcatggccgacagc 7088  T
Q  143 tacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcag 242  Q
     |||  | |||  ||||||||||| || || || |||||||||||  ||||||| |||||||||||  ||||||||||||||||| || |||| ||||||    
T  7089 gacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgtccagactattcccttgcctcctacagacattgagcttcttgcggcag 7188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 6285954 - 6285814
Alignment:
Q  87 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 186  Q
    |||| ||| ||||| |||||||||||| |||||| ||||||||||||||  |||   | | || |||  |||||||| || || ||||| ||||||||||    
T  6285954 acatcacgccctttgaggacatatgctggtactccagatggatcatggctagcagcgataggatggtccgtcacttggcagagcgggttcttaggcagta 6285855  T
Q  187 cgagtatgtctagactattcccaggcctcctacagacattg 227  Q
    || ||||||| |||||||||||||| |||||| ||||||||    
T  6285854 cgggtatgtccagactattcccagggctcctatagacattg 6285814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 35014337 - 35014454
Alignment:
Q  123 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 222  Q
    |||||||||||| ||||||  ||| || |||  ||||||||||| || ||||| |||||||||||| ||||||| ||||||||| |||| ||| |||| |    
T  35014337 gatggatcatggtcggcaacgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcacagggctcgtacata 35014436  T
Q  223 cattgggcctcttacggc 240  Q
    ||||| || | |||||||    
T  35014437 cattgagcttattacggc 35014454  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 2029728 - 2029818
Alignment:
Q  98 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacg 188  Q
    ||||||||| | |||| ||| ||| |||||||||||||||||||| | |||| |||  ||||||||||| || ||||| | ||||||||||    
T  2029728 tttcaggacgtgtgctggtattctggatggatcatggccggcaaacagaagatggtgcgtcacttgccagagcgggttctgaggcagtacg 2029818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 257416 - 257345
Alignment:
Q  156 gtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 227  Q
    ||||||||||| || ||||| ||||| |||||| ||||||| ||||||||| |||| |||| ||||||||||    
T  257416 gtcacttgccagagcgggttcttaggtagtacgggtatgtccagactattctcagggctcccacagacattg 257345  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 32451 - 32353
Alignment:
Q  98 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtc 196  Q
    |||||||||||||||| |||||| |||||||||||||||  || | ||| || |||  ||||||||||| || ||||| ||||| |||||  |||||||    
T  32451 tttcaggacatatgctggtactccagatggatcatggccaacagagacatgatggtccgtcacttgccagagcgggttcttaggtagtacaggtatgtc 32353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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