View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_high_28 (Length: 312)
Name: NF6868A_high_28
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 43001099 - 43001380
Alignment:
| Q |
12 |
tggacatcagaagagaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcag |
111 |
Q |
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| T |
43001099 |
tggacatcagaagagaaagaactattcttggagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcag |
43001198 |
T |
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| Q |
112 |
actgcgttgagttctactacaagaatcacaaatctgaatgttttgagaaactgaagaggaaagatgttggtaagctagggaagtcatatgcagctaaaac |
211 |
Q |
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| T |
43001199 |
actgcattgagttctactacaagaatcacaaatccgaatgttttgagaaactgaagaggaaagatattggtaagctagggaagtcatatgcagctaaaac |
43001298 |
T |
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| Q |
212 |
taactcgatgacatcaggtaaaaaatggaaccatgaagttaatgtttcttcacttgatattttgagtgctgcttcagtgatg |
293 |
Q |
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| T |
43001299 |
taacttgatggcatcaggtaaaaaatggaatcatgaagttaatgtttcttcacttgatattttgagtgctgcttcagtgatg |
43001380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 10696099 - 10696264
Alignment:
| Q |
12 |
tggacatcagaagagaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcag |
111 |
Q |
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||||| ||||||||||||||| | |||||| ||||||||||||| |||||||||||||| | |||||| || |||||||||| ||||||||||| || | |
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| T |
10696099 |
tggacttcagaagagaaagaggttttcttggagaaatttgctgcctttggaaaagattttcaaaaaatttctactttccttgaccacaagacaacagcgg |
10696198 |
T |
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| Q |
112 |
actgcgttgagttctactacaagaatcacaaatctgaatgttttgagaaactgaagaggaaagatg |
177 |
Q |
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| T |
10696199 |
actgtgtggaattctactacaaaaatcacaagtctgattgttttgagaaaatcaagaagaaagatg |
10696264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 10695493 - 10695368
Alignment:
| Q |
36 |
ttcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcgttgagttctactacaaga |
135 |
Q |
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|||||| |||||||||| || |||||||||||||| || |||||| || |||||||||| ||||||||||| |||||||| ||||| ||||| ||||| | |
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| T |
10695493 |
ttcttggagaaatttgcggcctttggaaaagattttcgaaaaatttctactttccttgaccacaagacaacagcagactgtgttgaattctaatacaaaa |
10695394 |
T |
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| Q |
136 |
atcacaaatctgaatgttttgagaaa |
161 |
Q |
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|||| || ||||| |||||||||||| |
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| T |
10695393 |
atcataagtctgattgttttgagaaa |
10695368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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