View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_high_29 (Length: 305)

Name: NF6868A_high_29
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_high_29
NF6868A_high_29
[»] chr6 (4 HSPs)
chr6 (23-175)||(31045598-31045750)
chr6 (177-205)||(26595350-26595378)
chr6 (175-203)||(30457433-30457461)
chr6 (175-203)||(32316972-32317000)
[»] chr4 (3 HSPs)
chr4 (164-203)||(46212958-46212997)
chr4 (175-203)||(27964986-27965014)
chr4 (175-203)||(39195054-39195082)
[»] chr7 (6 HSPs)
chr7 (175-209)||(41018662-41018696)
chr7 (175-203)||(9428435-9428463)
chr7 (175-203)||(27570354-27570382)
chr7 (175-203)||(40112998-40113026)
chr7 (175-203)||(43942648-43942676)
chr7 (175-203)||(45420093-45420121)
[»] scaffold0056 (1 HSPs)
scaffold0056 (174-203)||(76663-76692)
[»] scaffold0018 (1 HSPs)
scaffold0018 (96-137)||(171884-171925)
[»] chr5 (2 HSPs)
chr5 (175-203)||(32872942-32872970)
chr5 (175-203)||(42446335-42446363)
[»] chr3 (3 HSPs)
chr3 (175-203)||(20275732-20275760)
chr3 (175-203)||(32146030-32146058)
chr3 (173-209)||(35368619-35368655)
[»] chr2 (2 HSPs)
chr2 (175-203)||(9647143-9647171)
chr2 (175-203)||(18510674-18510702)
[»] chr1 (2 HSPs)
chr1 (175-203)||(49065408-49065436)
chr1 (175-203)||(49647194-49647222)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 31045750 - 31045598
Alignment:
Q  23 aacaatgccatcacactaaaaattagatactcatatatattctactatcaactatgtgtccccgatgcaaatttaaagcaattcctatgaattgtcgaaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31045750 aacaatgccatcacactaaaaattagatactcatatatattctactatcaactatgtgtccccgatgcaaatttaaagcaattcctatgaattgtcgaaa 31045651  T
Q  123 tattcatatataaatcagaaaattttggttcaaatagttactatatataggga 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31045650 tattcatatataaatcagaaaattttggttcaaatagttactatatataggga 31045598  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 26595350 - 26595378
Alignment:
Q  177 agaaatgatatttgaacaactatttttga 205  Q
    |||||||||||||||||||||||||||||    
T  26595350 agaaatgatatttgaacaactatttttga 26595378  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 30457433 - 30457461
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  30457433 agagaaatgatatttgaacaactattttt 30457461  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 32317000 - 32316972
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  32317000 agagaaatgatatttgaacaactattttt 32316972  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 46212958 - 46212997
Alignment:
Q  164 tatatatagggagagaaatgatatttgaacaactattttt 203  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  46212958 tatatataggaagagaaatgatatttgaacaactattttt 46212997  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 27964986 - 27965014
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  27964986 agagaaatgatatttgaacaactattttt 27965014  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 39195054 - 39195082
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  39195054 agagaaatgatatttgaacaactattttt 39195082  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 41018662 - 41018696
Alignment:
Q  175 agagaaatgatatttgaacaactatttttgaacaa 209  Q
    |||||||||||||||||||||||||||||| ||||    
T  41018662 agagaaatgatatttgaacaactatttttggacaa 41018696  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 9428435 - 9428463
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  9428435 agagaaatgatatttgaacaactattttt 9428463  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 27570354 - 27570382
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  27570354 agagaaatgatatttgaacaactattttt 27570382  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 40113026 - 40112998
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  40113026 agagaaatgatatttgaacaactattttt 40112998  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 43942648 - 43942676
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  43942648 agagaaatgatatttgaacaactattttt 43942676  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 45420121 - 45420093
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  45420121 agagaaatgatatttgaacaactattttt 45420093  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 203
Target Start/End: Complemental strand, 76692 - 76663
Alignment:
Q  174 gagagaaatgatatttgaacaactattttt 203  Q
    ||||||||||||||||||||||||||||||    
T  76692 gagagaaatgatatttgaacaactattttt 76663  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 171884 - 171925
Alignment:
Q  96 taaagcaattcctatgaattgtcgaaatattcatatataaat 137  Q
    |||| |||||||||||||||||| ||||||||||||| ||||    
T  171884 taaaacaattcctatgaattgtcaaaatattcatataaaaat 171925  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 32872970 - 32872942
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  32872970 agagaaatgatatttgaacaactattttt 32872942  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 42446363 - 42446335
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  42446363 agagaaatgatatttgaacaactattttt 42446335  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 20275760 - 20275732
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  20275760 agagaaatgatatttgaacaactattttt 20275732  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 32146058 - 32146030
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  32146058 agagaaatgatatttgaacaactattttt 32146030  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 35368619 - 35368655
Alignment:
Q  173 ggagagaaatgatatttgaacaactatttttgaacaa 209  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  35368619 ggagagaaatgatatttgtacaactatttttgtacaa 35368655  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 9647143 - 9647171
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  9647143 agagaaatgatatttgaacaactattttt 9647171  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 18510674 - 18510702
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  18510674 agagaaatgatatttgaacaactattttt 18510702  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 49065436 - 49065408
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  49065436 agagaaatgatatttgaacaactattttt 49065408  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 49647222 - 49647194
Alignment:
Q  175 agagaaatgatatttgaacaactattttt 203  Q
    |||||||||||||||||||||||||||||    
T  49647222 agagaaatgatatttgaacaactattttt 49647194  T

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