View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_high_45 (Length: 251)
Name: NF6868A_high_45
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_high_45 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 251
Target Start/End: Original strand, 31045043 - 31045288
Alignment:
| Q |
6 |
actgatatgaactataagcaaagagctcagataaagaccataaacagtgtgacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaag |
105 |
Q |
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| T |
31045043 |
actgacatgaactataagcaaagagctcagataaagaccataaacagtctgacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaag |
31045142 |
T |
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| Q |
106 |
ttgctcttctcctaaagcctcaccaaacgaagtttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaa |
205 |
Q |
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| T |
31045143 |
ttgctattctcctaaagcctcaccaaacgaagcttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaa |
31045242 |
T |
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| Q |
206 |
atttaaactcatgcaaacatgttattatagccctctcttcctctaa |
251 |
Q |
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| T |
31045243 |
atttaaactcatgcaaacatgttcatataaccctctctttctctaa |
31045288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 172344 - 172087
Alignment:
| Q |
6 |
actgatatgaactataagcaaagagctcagataaagaccataaaca--gtgtgacatgaatcatcacatgcaa--ggtatgca---gcagtgtatgta-a |
97 |
Q |
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| T |
172344 |
actgacatgaattataagcaaatagctcagataaagaccataaacaaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctaga |
172245 |
T |
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| Q |
98 |
aggaaaa-gttgctcttctcctaaagcctcaccaaacgaagtttgc------ggcatataacaagtcttcatcttcacattaaaaactttttgtatatgt |
190 |
Q |
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| T |
172244 |
aggaaaatgttgctcttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgt |
172145 |
T |
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| Q |
191 |
aaattaagattcaaaatttaaactcatgcaaacatgttattatagccctctcttcctct |
249 |
Q |
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| T |
172144 |
aaattaag-ttcaaaattcaatctcatgcaaacatgttcatataatcctctctttctct |
172087 |
T |
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