View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_high_55 (Length: 231)
Name: NF6868A_high_55
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 29408622 - 29408425
Alignment:
| Q |
20 |
aatattgctcattgcaatcatatttaagccacacatcattgatgaagttgaccatcttagcgcaaatcaccatagctaacttttttcttttgtaggaaat |
119 |
Q |
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| T |
29408622 |
aatattgctcattgcaatcatatttaagccacacatcattaatgaagttgaccatcttagcgcaaatcaccatagctaacttttttcttttgtaggaaat |
29408523 |
T |
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| Q |
120 |
ttctaaaccatatggctgacatttttggatatcttttgagaccatttttataatctacaaagtttattccagtcctcactctatagcctgatgtccat |
217 |
Q |
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| T |
29408522 |
ttctaaaccatatggctgacatttttggatatcttttgagaccatttttataatctacaaagtttattccagtcctcactctatagcctaatgtccat |
29408425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 29456102 - 29456183
Alignment:
| Q |
109 |
ttgtaggaaatttctaaaccatatggctgacatttttggatatcttttgagaccatttttataatctacaaagtttattcca |
190 |
Q |
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| T |
29456102 |
ttgtagaaaattcttaaaccagattgcagacatttttggatatcttttgatgccattattgtaatctacaaagtatattcca |
29456183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 29425821 - 29425705
Alignment:
| Q |
74 |
tcttagcgcaaatcaccatagctaacttttttcttttgtaggaaatttctaaaccatatggctgacatttttggatatcttttgagaccatttttataat |
173 |
Q |
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| T |
29425821 |
tcttagcgtgaatcaccatatgcaactattttatgttgtagaaaattcttgaaccatacagctgacatttttggatatcttttgaggccatcattgtaat |
29425722 |
T |
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| Q |
174 |
ctacaaagtttattcca |
190 |
Q |
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| T |
29425721 |
ctatgaagtatattcca |
29425705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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