View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_1 (Length: 696)
Name: NF6868A_low_1
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_1 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
| [»] scaffold0432 (3 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 39 - 696
Target Start/End: Original strand, 9804675 - 9805331
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9804675 |
tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga |
9804774 |
T |
|
| Q |
139 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9804775 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt |
9804874 |
T |
|
| Q |
239 |
tcatgaaacttcaacctcgtttcattatttggtcaaaaaaggtaatacaaacttttttcatatannnnnnnatcttgatcattttgcatgtctttctcta |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| |||| |||||||||||||||||||||| | |
|
|
| T |
9804875 |
tcatgaaagttcaacctcgtttcattatttgggcaagaaaggtaatccaaacttttttcatat-tttttttatctagatcattttgcatgtctttctcaa |
9804973 |
T |
|
| Q |
339 |
atttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttata |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9804974 |
atttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacacatggatttcttata |
9805073 |
T |
|
| Q |
439 |
ctcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcat |
538 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9805074 |
ctcttcaaattccccatcttacctttggggaagagtcttcctcctcatcaccagtgcttttcattttgttcaacaagaattccttttccctttgatgcat |
9805173 |
T |
|
| Q |
539 |
ttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaaaatcaca |
638 |
Q |
| |
|
| | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9805174 |
tcctatgtacaaaaatttaatataaaatgtgtactagaagtaaatagaaaataacaaatacaagtacatattttaataaccgaataaaaaaaaaatcaca |
9805273 |
T |
|
| Q |
639 |
atataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgtt |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9805274 |
atataccttgattctcccttttcgcgagtacatgaaataccttccatcttgtcctgtt |
9805331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 215 - 647
Target Start/End: Original strand, 9817777 - 9818211
Alignment:
| Q |
215 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttggtcaaaaaaggtaatacaaacttttttcatatannnnnnnatctt |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| || || |||| |
|
|
| T |
9817777 |
tggttatctcttttgatggaattttcatgaaacttcaacctcgttccattatttgggcaaaaaaggtaatcaaaactttttccacat--ttttttatcta |
9817874 |
T |
|
| Q |
315 |
gatcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaattta |
414 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9817875 |
gatcattttgcatgtctttctctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtgataaatacatggattttattttaattta |
9817974 |
T |
|
| Q |
415 |
ttatccacagatggatttcttat--actcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgttcaac |
512 |
Q |
| |
|
||||| ||| ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
9817975 |
ttatctacacatggatttcttttctactcttcaaattccccatcttacctttggggaagagtcttcctcctcatcactagtgcttttcattttgttcaac |
9818074 |
T |
|
| Q |
513 |
aagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatatttt |
612 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
9818075 |
aagaattccttttccctttgatgcattcttgtgtacaaaaatttaatataaattgtgtactagaagtaaatagaaaataacaaatacaagtacataattt |
9818174 |
T |
|
| Q |
613 |
aataaccgaataaaacaa--aaatcacaatatacctt |
647 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||| |
|
|
| T |
9818175 |
aataaccgtataaaaaaaataaatcacaatatacctt |
9818211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 366 - 688
Target Start/End: Complemental strand, 9806792 - 9806473
Alignment:
| Q |
366 |
tttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttat---actcttcaaattccccatcttactt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||| | ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
9806792 |
tttcaaacatcatactatgtaataaatacatggattttattttattttattgggtagacatgaacttcttattctactcttcaaattccccaccttactt |
9806693 |
T |
|
| Q |
463 |
ttggggaagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaattta |
557 |
Q |
| |
|
| ||| || ||||||||| ||| || | ||| || ||||||||||||||||| ||||||||||||||| ||||||||||||| | |
|
|
| T |
9806692 |
tcggg-aatagtcttcctcctcttctatagtggcctcctcttcattttgttcaacaataattccttttccctt------------gtgtacaaaaattaa |
9806606 |
T |
|
| Q |
558 |
agataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaa--aatcacaatataccttgattctcc |
655 |
Q |
| |
|
| |||||||||||| ||||| |||||| |||||||||| |||||||||||||| ||||||| | ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
9806605 |
atataaaatgtgtattagaaacaaatagaaaataacaaacacaagtacatatttgaataaccaactaaaataaataaatcacaatataccttgattctcc |
9806506 |
T |
|
| Q |
656 |
cttttcgcgagtacatgaaataccttccatctt |
688 |
Q |
| |
|
||||||| ||| || |||||||||||||||||| |
|
|
| T |
9806505 |
cttttcgtgagcacgtgaaataccttccatctt |
9806473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 9817550 - 9817693
Alignment:
| Q |
11 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
110 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| ||||| |
|
|
| T |
9817550 |
tgagatcgacatcaatcaaacaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacc |
9817649 |
T |
|
| Q |
111 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaa |
154 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
9817650 |
tctctcctaccaacattgctgagatcgacatcgatcagaaaaaa |
9817693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 9817438 - 9817577
Alignment:
| Q |
18 |
gacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcc |
117 |
Q |
| |
|
|||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| ||| | ||||||||||||||| |
|
|
| T |
9817438 |
gacatcgatcaatcaaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcc |
9817537 |
T |
|
| Q |
118 |
tagcaccatcactgagatcgacatcgatcagaaaaaagaa |
157 |
Q |
| |
|
|| |||||| ||||||||||||| |||| | ||||||| |
|
|
| T |
9817538 |
taccaccataggtgagatcgacatcaatcaaacaaaagaa |
9817577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||| |||||||||||||| || ||||||| ||| |||||| |
|
|
| T |
9817341 |
tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga |
9817439 |
T |
|
| Q |
139 |
catcgatca |
147 |
Q |
| |
|
||||||||| |
|
|
| T |
9817440 |
catcgatca |
9817448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 218 - 688
Target Start/End: Original strand, 11788 - 12264
Alignment:
| Q |
218 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttggtcaaaaaaggtaatacaaactttttt-catatannnnnnnatcttga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| ||||||||| || || |||| | |
|
|
| T |
11788 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattaattgggcataaaaggtaatcttaactttttttcacat--tgttttatctata |
11885 |
T |
|
| Q |
317 |
tcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttatt |
416 |
Q |
| |
|
| ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
11886 |
taattttgcatgtctttatctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtaataaatacatgaattttattttattttatt |
11985 |
T |
|
| Q |
417 |
atccacagatggatttctta---tactcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtg-----cttttcattttgtt |
508 |
Q |
| |
|
|| ||| || ||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| | |||||| ||| |||||||||||||| |
|
|
| T |
11986 |
atgtacacatagatttcttattctactcttcaaattccccatcttac-tttagggaagagtcttcctcgttatcactagtggcatccttttcattttgtt |
12084 |
T |
|
| Q |
509 |
caacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacata |
608 |
Q |
| |
|
||||||||||||||| |||||| | |||||| |||||| ||||||||| |||||||| |||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
12085 |
caacaagaattccttctcccttcgctgcattatcgtgtaccaaaatttaatataaaatg-gtactagaagtaaatataaaataacaaacataagtacata |
12183 |
T |
|
| Q |
609 |
ttttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatctt |
688 |
Q |
| |
|
|| ||||||| | ||||| || ||||||||| |||| ||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
12184 |
attgaataaccaactaaaaaaataaatcacaaaatacgttgattcccccttttcatgagtacatggaataccttccatctt |
12264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 11558 - 11708
Alignment:
| Q |
11 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
110 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || ||||| ||| | |||||| |
|
|
| T |
11558 |
tgagatcgacattgatcaaacaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacc |
11657 |
T |
|
| Q |
111 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaagaaccat |
161 |
Q |
| |
|
|||||| || ||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
11658 |
tctctcataccaccatcgctgagatcaacatcgattggaaaaaagaaccat |
11708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 11467 - 11585
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| || | ||| | ||||||||||| || || ||||||||||||| ||| ||| | | |||||||||| |
|
|
| T |
11467 |
tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga |
11566 |
T |
|
| Q |
139 |
catcgatcagaaaaaagaa |
157 |
Q |
| |
|
||| ||||| | ||||||| |
|
|
| T |
11567 |
cattgatcaaacaaaagaa |
11585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 215 - 369
Target Start/End: Complemental strand, 42778900 - 42778749
Alignment:
| Q |
215 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttggtcaaaaaaggtaatacaaacttttttcatatannnnnnnatctt |
314 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||||||||||||| | ||| ||||||||||||| ||||||||||||| || |||| |
|
|
| T |
42778900 |
tggttatctcttttgacggagttttcatgcaa-ttcaacctcgtttcatcaattgagcaaaaaaggtaatccaaacttttttcacat--ttctttatcta |
42778804 |
T |
|
| Q |
315 |
gatcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttc |
369 |
Q |
| |
|
|||||||||||| | |||||| | ||||||||||| ||||||| ||||||||||| |
|
|
| T |
42778803 |
gatcattttgcacgcctttctttgatttgtggttgccttttatatgagtggtttc |
42778749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 590 - 681
Target Start/End: Original strand, 2371052 - 2371144
Alignment:
| Q |
590 |
taacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaatacctt |
681 |
Q |
| |
|
||||||| | ||||| |||||| ||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
2371052 |
taacaaacataagtatatatttgaataatcgactaaaaaaataaatcacaatataccttgattctcctttttcacgagtacatggaatacctt |
2371144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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