View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_105 (Length: 289)
Name: NF6868A_low_105
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_105 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0313 (2 HSPs) |
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| [»] scaffold0764 (1 HSPs) |
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| [»] scaffold1531 (1 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 1976632 - 1976353
Alignment:
| Q |
10 |
atgaaatggatcctcaagggtttgagcaagctgaaaatcaaactggctttgatctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgc |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
1976632 |
atgaaatggatcctcaagagtttgagcaagctgataatcaaactggctttgatctaaatatggaagatcctagcacagatttgcatgtgtaccaagatgc |
1976533 |
T |
|
| Q |
110 |
acagcctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaacttcaagaaaatcctgcaatcacagctcagaatgttcagacaaatgcatct |
209 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1976532 |
acaacctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatct |
1976433 |
T |
|
| Q |
210 |
gctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatccctcaagcatcaggatcacttccctctgatga |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1976432 |
gctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcctcaagcatcaggatcacttccctctgatga |
1976353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 1983998 - 1983719
Alignment:
| Q |
10 |
atgaaatggatcctcaagggtttgagcaagctgaaaatcaaactggctttgatctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgc |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| |
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| T |
1983998 |
atgaaatggatcctcaagagtttgagcaagctgataatcaaactggctttgatctaaatatggaagatcctagcacagatttgcatgtgtaccaagatgc |
1983899 |
T |
|
| Q |
110 |
acagcctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaacttcaagaaaatcctgcaatcacagctcagaatgttcagacaaatgcatct |
209 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
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| T |
1983898 |
acaacctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaacttcaagaaattcctgcaatcatagttcagaatgttcagacaaatgcatct |
1983799 |
T |
|
| Q |
210 |
gctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatccctcaagcatcaggatcacttccctctgatga |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1983798 |
gctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcctcaagcatcaggatcacttccctctgatga |
1983719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 27161871 - 27161586
Alignment:
| Q |
10 |
atgaaatggatcctcaagggtttgagcaagctgaaaatcaaactggctttgatctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgc |
109 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
27161871 |
atgaaatggagcctcaagagtttgagcaagctgaaaatcaaactggctttgatctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgc |
27161772 |
T |
|
| Q |
110 |
acagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcaggaacttcaagaaaatcctgcaatcacagctcagaatgttcagacaaat |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27161771 |
acagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattcaggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaat |
27161672 |
T |
|
| Q |
204 |
gcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatccctcaagcatcaggatcacttccctctgatga |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27161671 |
gcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcctcaagcatcaggatcacttccctctgatga |
27161586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 75 - 285
Target Start/End: Original strand, 23720136 - 23720352
Alignment:
| Q |
75 |
gatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcaggaacttcaagaaa |
168 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||| |||||||||||| |
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| T |
23720136 |
gatccaagctcagatttaaatgtgtaccaagatgcacagcctgaaaacaatgaggatgtgcttcaggaagatcgtgaaatgattcagaaacttcaagaaa |
23720235 |
T |
|
| Q |
169 |
atcctgcaatcacagctcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatccctcaagcatc |
268 |
Q |
| |
|
|||||||||||| || ||| |||| ||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||| || || ||||||||||| |
|
|
| T |
23720236 |
atcctgcaatcatagttcataatgctcagaaaaatgcaactgctgaacctagcttgcctcaggagaatgaaatgtcagttgaccccattcctcaagcatc |
23720335 |
T |
|
| Q |
269 |
aggatcacttccctctg |
285 |
Q |
| |
|
|||||| || ||||||| |
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| T |
23720336 |
aggatctctgccctctg |
23720352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 22910664 - 22910498
Alignment:
| Q |
10 |
atgaaatggatcctcaagggtttgagcaagctgaaaatcaaactggctttgatctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgc |
109 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| |
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|
| T |
22910664 |
atgaaatggattctcaagaaattgagcaagctgaaaaccaaactggctttgatctaaatgtggaggatccaagctcatatttgaatgtgtaccaagatgc |
22910565 |
T |
|
| Q |
110 |
acagcctgaaaacaatgaggaagt------gcaagctcatgaaatgattcaggaacttcaagaaaat |
170 |
Q |
| |
|
||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
22910564 |
acaacctgaaaacaatgaggaagtgtttcaggaagctcattaaatgattcaggaacttcaagaaaat |
22910498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 20956317 - 20956602
Alignment:
| Q |
10 |
atgaaatggatcctcaagggtttgagcaagctgaaaatcaaactggctttgatctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgc |
109 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
20956317 |
atgaaatggagcctcaaggttttgagcaagctgaaaatcaaactggccttgatctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgc |
20956416 |
T |
|
| Q |
110 |
acagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcaggaacttcaagaaaatcctgcaatcacagctcagaatgttcagacaaat |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20956417 |
acagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattcaggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaat |
20956516 |
T |
|
| Q |
204 |
gcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatccctcaagcatcaggatcacttccctctgatga |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20956517 |
gcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcctcaagcatcaggatcacttccctctgatga |
20956602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 3859 - 4144
Alignment:
| Q |
10 |
atgaaatggatcctcaagggtttgagcaagctgaaaatcaaactggctttgatctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgc |
109 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
3859 |
atgaaatggagcctcaagagtttgagcaagctgaaaatcaaactggctttaatctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgc |
3958 |
T |
|
| Q |
110 |
acagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcaggaacttcaagaaaatcctgcaatcacagctcagaatgttcagacaaat |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3959 |
acagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattcaggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaat |
4058 |
T |
|
| Q |
204 |
gcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatccctcaagcatcaggatcacttccctctgatga |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4059 |
gcatctgctgaacctagcttgcctcaagagaatgagatgtcagttgatcctattcctcaagcatcaggatcacttccctctgatga |
4144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 18016 - 18301
Alignment:
| Q |
10 |
atgaaatggatcctcaagggtttgagcaagctgaaaatcaaactggctttgatctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgc |
109 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
18016 |
atgaaatggagcctcaagagtttgagcaagctgaaaatcaaactggctttaatctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgc |
18115 |
T |
|
| Q |
110 |
acagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcaggaacttcaagaaaatcctgcaatcacagctcagaatgttcagacaaat |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18116 |
acagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattcaggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaat |
18215 |
T |
|
| Q |
204 |
gcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatccctcaagcatcaggatcacttccctctgatga |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18216 |
gcatctgctgaacctagcttgcctcaagagaatgagatgtcagttgatcctattcctcaagcatcaggatcacttccctctgatga |
18301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 2755 - 2468
Alignment:
| Q |
10 |
atgaaatggatcctcaagggtttgagcaagctgaaaat--caaactggctttgatctaaatgtggaagatccaagcacagatttgaatgtgtaccaagat |
107 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2755 |
atgaaatggagcctcaagagtttgagcaagctgaaaaatacaaactggctttaatctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagat |
2656 |
T |
|
| Q |
108 |
gcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcaggaacttcaagaaaatcctgcaatcacagctcagaatgttcagacaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2655 |
gcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattcaggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaa |
2556 |
T |
|
| Q |
202 |
atgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatccctcaagcatcaggatcacttccctctgatga |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2555 |
atgcatctgctgaacctagcttgcctcaagagaatgagatgtcagttgatcctattcctcaagcatcaggatcacttccctctgatga |
2468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1531 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1531
Description:
Target: scaffold1531; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 1622 - 1685
Alignment:
| Q |
10 |
atgaaatggatcctcaagggtttgagcaagctgaaaatcaaactggctttgatctaaatgtgga |
73 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1622 |
atgaaatggattctcaagaaattgagcaagctgataatcaaactggctttgatctaaatgtgga |
1685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 42404 - 42347
Alignment:
| Q |
147 |
atgattcaggaacttcaagaaaatcctgcaatcacagctcagaatgttcagacaaatg |
204 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| || |||||||||||| ||||||| |
|
|
| T |
42404 |
atgattcaggatattcaagaaaatcctgaaatcatagttcagaatgttcaaacaaatg |
42347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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