View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_115 (Length: 283)
Name: NF6868A_low_115
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_115 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 482583 - 482308
Alignment:
| Q |
7 |
aatatatgagccatttgcatcgttatcagtgtcaatattttgacttctgttttatgaatatataattgaaacatgttatccaaaaagaaaggggatttta |
106 |
Q |
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| T |
482583 |
aatatatgagccatttgcatcgttatcagtgtcaatattttgacttctgttttatgaatatataattgaaacatat-atccaaaaagaaaggggatttta |
482485 |
T |
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| Q |
107 |
ttttaatgaacaatttgaatgattgtgtatttataaaatttaaatatgagcatgaatctggtaaggaatttactcaggttgaaggcttggcaaaacattt |
206 |
Q |
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| T |
482484 |
ttttaatgaacaatttgaatgattgtgtatttataaaatttaaatatgagcatgaatctggtaaggaatttactcaggttgaaggcttggcaaaacattt |
482385 |
T |
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| Q |
207 |
acgttgtgttgggatagatgctgcagttccttcttcaaagaagcctgaaccaaggtaataatagagtatgcttctga |
283 |
Q |
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| T |
482384 |
acgttgtgttgggatagatgctgcagttccttcttcaaagaagcctgaaccaaggtaataatagagtatgcttctga |
482308 |
T |
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