View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_117 (Length: 281)
Name: NF6868A_low_117
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_117 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 28608940 - 28609200
Alignment:
| Q |
21 |
tgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28608940 |
tgttggaggtcctgatgatcgcgaagcattatctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcctgtttggt |
28609039 |
T |
|
| Q |
121 |
aaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28609040 |
aaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatg |
28609139 |
T |
|
| Q |
221 |
ttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagttga |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28609140 |
ttaatggatttagattgacaacgatgaacaacaatgattctatatcttattcagaagttga |
28609200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 437964 - 437706
Alignment:
| Q |
21 |
tgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggt |
120 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| |||||||| ||| |||||| | ||||||||||| | |||||||||||||||| |||||| | |
|
|
| T |
437964 |
tgttggtggtcctgatgatcgcgaagccttagctgttgcatggagaatggcaggacgcataggaacccaattatcagtggttcggatgctcctgtttgat |
437865 |
T |
|
| Q |
121 |
aaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatg |
220 |
Q |
| |
|
|| |||| |||||| |||||| ||||||||| | || || || ||| ||||||| ||||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
437864 |
aatgctgaaatagtagacacctcaagtcatgctgaaccacaagggatactatctattgtaatggatagtgagaagcagaaggagttagatgatgagtatg |
437765 |
T |
|
| Q |
221 |
ttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagtt |
279 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
437764 |
tgaatggatttagattgacagcgatgaacaacaatgattctatatcttattcagaagtt |
437706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 13660313 - 13660408
Alignment:
| Q |
23 |
ttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttg |
118 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||||||| || ||| |||||||| | | | ||||||||||||||||||||| |
|
|
| T |
13660313 |
ttggaggtcctgatgatcatgaagccttagctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatgctcttgtttg |
13660408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University