View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_12 (Length: 479)
Name: NF6868A_low_12
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 32853431 - 32853902
Alignment:
| Q |
1 |
tcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853431 |
tcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaag |
32853530 |
T |
|
| Q |
101 |
aataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853531 |
aataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcatt |
32853630 |
T |
|
| Q |
201 |
aatcatagtagagaataacttatttgcatcatcttctgcagaaaaattaattccttttattctttcatcttattctttcttcttatgccaacaatctcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
32853631 |
aatcatagtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctcta |
32853730 |
T |
|
| Q |
301 |
cttgaatggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgc-aaataaagcaataagaattagaatta |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32853731 |
cttgaatggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaaataaagcaataagaattagaatta |
32853830 |
T |
|
| Q |
400 |
cctcgtatcctttctcctcctcttcctttgtatccataatgccttccatgacccctgttggaaggatgtcca |
471 |
Q |
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| T |
32853831 |
cctcgtatcctttctcctcctcttcctttgtatccataatgccttccatgacctctgttggaaggatgtcca |
32853902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 37176567 - 37177037
Alignment:
| Q |
1 |
tcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176567 |
tcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaag |
37176666 |
T |
|
| Q |
101 |
aataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| |
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| T |
37176667 |
aataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctacaaccactatctaaaaaccacatctcaccagattttttatcatt |
37176766 |
T |
|
| Q |
201 |
aatcatagtagagaataacttatttgcatcatcttctgcagaaaaattaattccttttattctttcatcttattctttcttcttatgccaacaatctcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
37176767 |
aatcatagtagagaataacttatttgcatcatcttttgcagaaaaattaattccctttattctttcatcattttctttcttcttatgccaacaatctcta |
37176866 |
T |
|
| Q |
301 |
cttgaatggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176867 |
cttgaatggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattac |
37176966 |
T |
|
| Q |
401 |
ctcgtatcctttctcctcctcttcctttgtatccataatgccttccatgacccctgttggaaggatgtcca |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
37176967 |
ctcgtatcctttctcctcctcttcctttgtatccataatgccttccatgacctatgttggaaggatgtcca |
37177037 |
T |
|
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