View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_120 (Length: 279)
Name: NF6868A_low_120
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_120 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 2 - 279
Target Start/End: Complemental strand, 37576011 - 37575734
Alignment:
| Q |
2 |
caacaaaaagtataacggatagttaagaatagcagtaacaaaaagcatagaacaatgtaattaccgtagatccggcaaggttatggttgatcggtggaaa |
101 |
Q |
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| T |
37576011 |
caacaaaaagtataacggatagttaagaatagcagtaacaaaaagcatagaacaatgtaattaccgtagatccggcaaggttatggttgatcggtggaaa |
37575912 |
T |
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| Q |
102 |
tgaatcatgatcaaacaacggggagcaaaagcaaatggcaagcaatgtgtcagtaaactgttgtgactgtaaaccattcatgatggatccatcagtcata |
201 |
Q |
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| T |
37575911 |
tgaatcatgatcaaacaatggggagcaaaagcaaatggcaagcaatgtgtcggtaaccttttgtgactgtaaaccattcatgatggatccatcagtcaca |
37575812 |
T |
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| Q |
202 |
aaaacccattgcttcttttgctgacttgacgtataaacctttcccacatgcacaacaaatgcgacaacaccaaactcg |
279 |
Q |
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| T |
37575811 |
aaaacccattgcttcttttgctgacttgacgtataaacctttcccacatgcacaacaaatgcgacaacatcgaactcg |
37575734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 37576053 - 37576009
Alignment:
| Q |
102 |
tgaatcatgatcaaacaacggggagcaaaagcaaatggcaagcaa |
146 |
Q |
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| T |
37576053 |
tgaatcatgatcaatcaatagggagcaaaagcaaatggcaagcaa |
37576009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 35 - 263
Target Start/End: Complemental strand, 10439001 - 10438773
Alignment:
| Q |
35 |
agtaacaaaaagcatagaacaatgtaattaccgtagatccggcaaggttatggttgatcggtggaaatgaatcatgatcaaacaacggggagcaaaagca |
134 |
Q |
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| T |
10439001 |
agtaacaaaaggtatagaacaatgtaattaccgtagatccagcaaggttatggttgattggtggaaatgaatcatgatcaatcaatggggagcaaaagaa |
10438902 |
T |
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| Q |
135 |
aatggcaagcaatgtgtcagtaaactgttgtgactgtaaaccattcatgatggatccatcagtcataaaaacccattgcttcttttgctgacttgacgta |
234 |
Q |
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||| |||||||||||||| ||||||| | ||| |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||| |
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| T |
10438901 |
aatagcaagcaatgtgtccgtaaacttctctgattgtaaacctttcatgatcgatccatcagtcacaaaaacccattgcttcttttgctgacctgatgta |
10438802 |
T |
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| Q |
235 |
taaacctttcccacatgcacaacaaatgc |
263 |
Q |
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| T |
10438801 |
taagcctttccgacatgcacaacaaatgc |
10438773 |
T |
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