View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_122 (Length: 278)
Name: NF6868A_low_122
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_122 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 42867895 - 42867629
Alignment:
| Q |
9 |
gctggtgccatttatgagaggaagtatttgcttgggacctcaatggcccgtcctgtaattgcaaaggtacttcggcttgaagtttgatatttcatttcaa |
108 |
Q |
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| T |
42867895 |
gctggtgccatttatgagaggaagtatttgcttgggacctcaatggcccgtcctgtaattgcaaaggtacttcggcttgaagtttgatatttcatttcaa |
42867796 |
T |
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| Q |
109 |
cttgtaaaacctttttgcttgtaaatatgtacacccaacacttcagattaaaggcgtgtctggtgtccaacacgtgccagtgtcttacactgacactggc |
208 |
Q |
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| T |
42867795 |
cttgtaaaacctttttgcttgtaaatatgtacacccaacacttcagattaaaggcgtgtccggtgtccaacacgtgccagtgtcttacactgacactggc |
42867696 |
T |
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| Q |
209 |
acatgtatttatattcagtttcttccattcttcaaataataatcggttgacatgtcaatgttatgtc |
275 |
Q |
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| T |
42867695 |
acatgtatttatattcagtttcttccattcttcaaataataatcggttgacatgtcaatgttatgtc |
42867629 |
T |
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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 18854738 - 18854642
Alignment:
| Q |
9 |
gctggtgccatttatgagaggaagtatttgcttgggacctcaatggcccgtcctgtaattgcaaaggtacttcggcttgaagtttgatatttcattt |
105 |
Q |
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| T |
18854738 |
gctggtgctatttatgagaggaagtatttgcttgggacctcaatggcacgtcctgtaattgcaaaggtactttggcttgaagtttgatatttcattt |
18854642 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 33991479 - 33991545
Alignment:
| Q |
12 |
ggtgccatttatgagaggaagtatttgcttgggacctcaatggcccgtcctgtaattgcaaaggtac |
78 |
Q |
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| T |
33991479 |
ggtgcaatttatgagaggaagtatttgcttggaactgcaatagctcgccctgtaattgcaaaggtac |
33991545 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 14762875 - 14762925
Alignment:
| Q |
143 |
ccaacacttcagattaaaggcgtgtctggtgtccaacacgtgccagtgtct |
193 |
Q |
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| T |
14762875 |
ccaacacttcaaattgaaggcgtgtctggtgtccgacacgtatcagtgtct |
14762925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 35390690 - 35390649
Alignment:
| Q |
143 |
ccaacacttcagattaaaggcgtgtctggtgtccaacacgtg |
184 |
Q |
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| T |
35390690 |
ccaaaacttcagattgaaggtgtgtctggtgtccaacacgtg |
35390649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 32547552 - 32547584
Alignment:
| Q |
143 |
ccaacacttcagattaaaggcgtgtctggtgtc |
175 |
Q |
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| T |
32547552 |
ccaacacttcagattaaaggcgtgtccggtgtc |
32547584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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