View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_127 (Length: 276)

Name: NF6868A_low_127
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_127
NF6868A_low_127
[»] chr8 (14 HSPs)
chr8 (34-168)||(15051906-15052042)
chr8 (33-168)||(15066120-15066247)
chr8 (169-276)||(1786485-1786593)
chr8 (169-264)||(3877569-3877664)
chr8 (169-274)||(13800640-13800745)
chr8 (172-267)||(30089169-30089267)
chr8 (33-75)||(15076022-15076064)
chr8 (169-244)||(533713-533788)
chr8 (88-126)||(15215211-15215249)
chr8 (123-163)||(13032961-13033001)
chr8 (172-242)||(30936663-30936734)
chr8 (6-44)||(15066058-15066096)
chr8 (6-44)||(15075960-15075998)
chr8 (122-168)||(15076154-15076200)
[»] chr5 (9 HSPs)
chr5 (169-276)||(39885812-39885919)
chr5 (167-274)||(31480458-31480565)
chr5 (167-251)||(40321495-40321579)
chr5 (169-251)||(41405992-41406074)
chr5 (169-251)||(1836015-1836097)
chr5 (172-262)||(6767928-6768018)
chr5 (168-244)||(24782708-24782784)
chr5 (167-216)||(32720174-32720223)
chr5 (169-221)||(30628731-30628783)
[»] chr3 (10 HSPs)
chr3 (169-276)||(29702389-29702496)
chr3 (169-274)||(29835757-29835862)
chr3 (163-251)||(12945475-12945563)
chr3 (169-275)||(5234703-5234809)
chr3 (169-275)||(20108043-20108149)
chr3 (169-274)||(33213415-33213520)
chr3 (167-266)||(55406367-55406465)
chr3 (227-276)||(53284239-53284288)
chr3 (168-241)||(31654615-31654689)
chr3 (168-244)||(39831200-39831276)
[»] chr4 (9 HSPs)
chr4 (168-276)||(15530059-15530167)
chr4 (169-251)||(24226870-24226952)
chr4 (169-264)||(45988116-45988211)
chr4 (169-274)||(42063003-42063108)
chr4 (170-274)||(47028101-47028205)
chr4 (168-241)||(55917400-55917473)
chr4 (169-244)||(20135440-20135515)
chr4 (169-241)||(42980257-42980330)
chr4 (172-236)||(28683092-28683155)
[»] chr2 (8 HSPs)
chr2 (163-264)||(33751500-33751601)
chr2 (168-264)||(7091098-7091194)
chr2 (172-263)||(30778295-30778386)
chr2 (168-275)||(37080703-37080810)
chr2 (167-244)||(37259669-37259746)
chr2 (169-244)||(16431880-16431955)
chr2 (166-244)||(14805571-14805649)
chr2 (167-244)||(17692623-17692700)
[»] chr7 (5 HSPs)
chr7 (168-274)||(6444140-6444246)
chr7 (167-263)||(34095841-34095937)
chr7 (169-275)||(47329642-47329748)
chr7 (169-244)||(29245281-29245356)
chr7 (168-244)||(45974452-45974528)
[»] chr1 (7 HSPs)
chr1 (172-262)||(49410512-49410602)
chr1 (162-274)||(47036243-47036355)
chr1 (169-274)||(45319607-45319712)
chr1 (175-241)||(22105398-22105464)
chr1 (169-244)||(12983549-12983624)
chr1 (169-244)||(45346264-45346339)
chr1 (168-214)||(52382617-52382663)
[»] scaffold0896 (1 HSPs)
scaffold0896 (169-274)||(1925-2030)
[»] chr6 (4 HSPs)
chr6 (169-274)||(7124334-7124439)
chr6 (172-267)||(945082-945177)
chr6 (178-275)||(4181220-4181317)
chr6 (169-221)||(12945699-12945751)
[»] scaffold0662 (1 HSPs)
scaffold0662 (170-274)||(6980-7084)
[»] scaffold0166 (1 HSPs)
scaffold0166 (168-244)||(25091-25167)
[»] scaffold0685 (1 HSPs)
scaffold0685 (168-214)||(6630-6676)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 15051906 - 15052042
Alignment:
Q  34 attatatatctctcccagctggtataacatttt--ttaataccactagatcacaaggttccatttcataaagtattaaataaaatcctaaactaattaaa 131  Q
    |||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  15051906 attatatatctctcccagctggtataacattttttttaataccattagatcacaaggttccatttcataaagtattaaataaaatcctaatctagttaaa 15052005  T
Q  132 attattgaatgaatacttgcatcgtgctataaataat 168  Q
    ||||||||||||||||| | |||||||||||||||||    
T  15052006 attattgaatgaatactggtatcgtgctataaataat 15052042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 15066120 - 15066247
Alignment:
Q  33 gattatatatctctcccagctggtataacattttttaataccactagatcacaaggttccatttcataaagtattaaataaaatcctaaactaattaaaa 132  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  15066120 gattatatatctatcccagctggtataacattttttaataccactagatcacaaggttccatttc--------ttaaataaaatcctaaactaattaaaa 15066211  T
Q  133 ttattgaatgaatacttgcatcgtgctataaataat 168  Q
    ||||||||||| |||| |||||||||||||||||||    
T  15066212 ttattgaatgagtactggcatcgtgctataaataat 15066247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 1786485 - 1786593
Alignment:
Q  169 gggaaatt-ctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcat 267  Q
    |||||||| |||||||||||||||||| ||||||||||  ||||||||||| || ||  |||||||||| ||||| |||||||| |||||||||||||||    
T  1786485 gggaaattactatggtgaagttgttcaattgactttttttgtgaagttaccatacatctaataataatgcgccacgtgtcatgtgtgctgattgttgcat 1786584  T
Q  268 agtatgtga 276  Q
    |||||||||    
T  1786585 agtatgtga 1786593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 3877569 - 3877664
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttg 264  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||||||||| || ||||||||||||||||| | |||||| || |||||||||    
T  3877569 gggaaattctatggtgaagtcgttcaattgattttttcggtgaagttaccctacatccaataataatgtgccacgtatcatgtgtgttgattgttg 3877664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 13800640 - 13800745
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    ||||||||||||||||||||  |||| ||||||||||| |||||||||| ||| || ||||||||||| | |||||| ||| | |||||||||||||||     
T  13800640 gggaaattctatggtgaagtcattcaattgactttttcagtgaagttactctacatccaataataatgcgtcacatggcatttgtgctgattgttgcatg 13800739  T
Q  269 gtatgt 274  Q
    ||||||    
T  13800740 gtatgt 13800745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 30089267 - 30089169
Alignment:
Q  172 aaattctatggtgaagttgttcagttgactttttcggtgaagttaccct---aaattcaataataatgtgccacatgtcatgtctgctgattgttgcat 267  Q
    |||||||||||||||||  |||| ||||||||||| ||||||||| |||   | || |||||||||||||||||||||||||| |||||||||||||||    
T  30089267 aaattctatggtgaagtctttcaattgactttttcagtgaagttatcctcctacatccaataataatgtgccacatgtcatgtgtgctgattgttgcat 30089169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 15076022 - 15076064
Alignment:
Q  33 gattatatatctctcccagctggtataacattttttaatacca 75  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  15076022 gattatatatctatcccagctggtataacattttttaatacca 15076064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 533788 - 533713
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    ||||||||||||||||||||  || | ||||||||||| | ||||||| |||| || ||||||||||| |||||||    
T  533788 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacat 533713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 15215249 - 15215211
Alignment:
Q  88 gttccatttcataaagtattaaataaaatcctaaactaa 126  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  15215249 gttccatttcataaagtattaaataaaatcctaatctaa 15215211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 13032961 - 13033001
Alignment:
Q  123 ctaattaaaattattgaatgaatacttgcatcgtgctataa 163  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  13032961 ctaattaaaattattgaatgaatactggtatcgtgctataa 13033001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 30936663 - 30936734
Alignment:
Q  172 aaattctatggtgaagttgttcagttgactttttcggtgaagtt-accctaaattcaataataatgtgccac 242  Q
    |||||||||||||||||| || | |||||||||||||| || || | |||| || |||||||||||||||||    
T  30936663 aaattctatggtgaagttatttaattgactttttcggtaaaattaatcctacatccaataataatgtgccac 30936734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 15066058 - 15066096
Alignment:
Q  6 cgaagaatattatatcgtcattgattagattatatatct 44  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  15066058 cgaaaaatattatatcgtcattgattagattataaatct 15066096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 15075960 - 15075998
Alignment:
Q  6 cgaagaatattatatcgtcattgattagattatatatct 44  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  15075960 cgaaaaatattatatcgtcattgattagattataaatct 15075998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 15076154 - 15076200
Alignment:
Q  122 actaattaaaattattgaatgaatacttgcatcgtgctataaataat 168  Q
    |||| |||||||||||||||||||||| | ||| |||||||||||||    
T  15076154 actagttaaaattattgaatgaatactggtatcatgctataaataat 15076200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 39885919 - 39885812
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39885919 gggaaattctatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtgtgctgattgttgcata 39885820  T
Q  269 gtatgtga 276  Q
    ||||||||    
T  39885819 gtatgtga 39885812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 31480458 - 31480565
Alignment:
Q  167 atgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgca 266  Q
    |||||||||||||||| |||||  |||| |||||||||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||||||||    
T  31480458 atgggaaattctatggagaagtcattcaattgactttttcggtgaagttaccctacatccaataataatgcgtcacatgtcatgtgtgctgattgttgca 31480557  T
Q  267 tagtatgt 274  Q
    | ||||||    
T  31480558 tggtatgt 31480565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 40321579 - 40321495
Alignment:
Q  167 atgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgt 251  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||| |||| || ||||||||||| ||||||||||||||    
T  40321579 atgggaaattctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgt 40321495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 41405992 - 41406074
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgt 251  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||| |||| || ||||||||||| ||||||||||||||    
T  41405992 gggaaattctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgt 41406074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 1836097 - 1836015
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgt 251  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||||| |||| || ||||||||||| ||||||||||||||    
T  1836097 gggaaattctatggtgaagttgttcaattgattttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgt 1836015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 6767928 - 6768018
Alignment:
Q  172 aaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgt 262  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||| ||| || ||||||||||| |||||||||||||| |||| |||||    
T  6767928 aaattctatggtgaagttcctcaattgactttttcggtgaagttactctacatccaataataatgcgccacatgtcatgtgtgctaattgt 6768018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 24782708 - 24782784
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    |||||||||||||||||||||  || | ||||||||||| | ||||||| |||| || ||||||||||| |||||||    
T  24782708 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacat 24782784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 32720223 - 32720174
Alignment:
Q  167 atgggaaattctatggtgaagttgttcagttgactttttcggtgaagtta 216  Q
    |||| |||||||| ||| ||||| |||| |||||||||||||||||||||    
T  32720223 atggaaaattctacggtaaagttattcaattgactttttcggtgaagtta 32720174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 30628783 - 30628731
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttacccta 221  Q
    ||||||||||| |||||||||||  |  |||||||||||||||||| ||||||    
T  30628783 gggaaattctacggtgaagttgtcaaaatgactttttcggtgaagtaacccta 30628731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 29702389 - 29702496
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  29702389 gggaaattctatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataataatgtgccatatgtcatgtgtgctgattgttgcata 29702488  T
Q  269 gtatgtga 276  Q
    ||||||||    
T  29702489 gtatgtga 29702496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 29835862 - 29835757
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    ||||||||||||||||||||  |||| ||||||||||| |||||||||||||| || ||||||||||| | |||||| ||||| |||||||||||||||     
T  29835862 gggaaattctatggtgaagtcattcaattgactttttcagtgaagttaccctacatccaataataatgcgtcacatggcatgtgtgctgattgttgcatg 29835763  T
Q  269 gtatgt 274  Q
    ||||||    
T  29835762 gtatgt 29835757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 12945563 - 12945475
Alignment:
Q  163 aataatgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgt 251  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| |||||||| |||| || ||||||||||| ||||||||||||||    
T  12945563 aataaagggaaattctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgt 12945475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 5234809 - 5234703
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    |||||||| |||||||||||| |||| |||||||||| | |||||||| |||| |||||||||||||| ||||  |||||||| || | |||||||||||    
T  5234809 gggaaattttatggtgaagttattcaattgacttttttgatgaagttatcctacattcaataataatgcgccatgtgtcatgtgtgtttattgttgcata 5234710  T
Q  269 gtatgtg 275  Q
    |||||||    
T  5234709 gtatgtg 5234703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 20108149 - 20108043
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||||| | || || ||||||||||| |||| ||||||||| || | |||||||||||    
T  20108149 gggaaattctatggtgaagttattcaattgacttttttggtgaagttatcttacatccaataataatgcgccatatgtcatgtgtgtttattgttgcata 20108050  T
Q  269 gtatgtg 275  Q
     ||||||    
T  20108049 atatgtg 20108043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 33213415 - 33213520
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    ||||||||||||||| ||||  || | |||||||||||| |||||||||| || || ||||||||||||| || ||||||||| |||||||||||||||     
T  33213415 gggaaattctatggtaaagtcatttaattgactttttcgatgaagttaccatacatccaataataatgtgtcatatgtcatgtgtgctgattgttgcatg 33213514  T
Q  269 gtatgt 274  Q
    ||||||    
T  33213515 gtatgt 33213520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 167 - 266
Target Start/End: Complemental strand, 55406465 - 55406367
Alignment:
Q  167 atgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgca 266  Q
    |||| |||||| ||||| |||||||||| |||| ||||||||||||||||||||| || ||||||||||||||||| | |||||| || |||||||||||    
T  55406465 atggaaaattcgatggtaaagttgttcaattga-tttttcggtgaagttaccctacatccaataataatgtgccacgtatcatgtgtgttgattgttgca 55406367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 53284288 - 53284239
Alignment:
Q  227 aataataatgtgccacatgtcatgtctgctgattgttgcatagtatgtga 276  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  53284288 aataataatgcgccacatgtcatgtgtgctgattgttgcatagtatgtga 53284239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 31654615 - 31654689
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttacccta-aattcaataataatgtgcca 241  Q
    |||||||||||| ||||||||  |||| || |||||||||||||||||| ||||  || ||||||||||||||||    
T  31654615 tgggaaattctacggtgaagtcattcaattaactttttcggtgaagttatcctacgatccaataataatgtgcca 31654689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 39831200 - 39831276
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    |||||||||||||||||||||  || | ||||||||||| | | ||||| |||| || ||||||||||| |||||||    
T  39831200 tgggaaattctatggtgaagtcattaaattgactttttcagagcagttatcctacatccaataataatgcgccacat 39831276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 15530059 - 15530167
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcat 267  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  15530059 tgggaaattctatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataaaaatgtgtcacatgtcatgtgtgctgattgttgcat 15530158  T
Q  268 agtatgtga 276  Q
    |||||||||    
T  15530159 agtatgtga 15530167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 24226870 - 24226952
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgt 251  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||| |||| || ||||||||||| ||||||||||||||    
T  24226870 gggaaattctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataatgcgccacatgtcatgt 24226952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 45988116 - 45988211
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttg 264  Q
    |||||||| |||||||||||  |||| ||||||||||||||||||||| |||| |||||||||| ||| |||||||||||||| || |||||||||    
T  45988116 gggaaattttatggtgaagtcattcaattgactttttcggtgaagttatcctacattcaataatgatgcgccacatgtcatgtgtgttgattgttg 45988211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 42063003 - 42063108
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    ||||||||||||||||||||  |||| |||||||||| |||||||||| |||| |||||||||||||  ||||| |||||||| || ||||||||| ||     
T  42063003 gggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataatacgccacgtgtcatgtgtgttgattgttgaatg 42063102  T
Q  269 gtatgt 274  Q
    ||||||    
T  42063103 gtatgt 42063108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 47028101 - 47028205
Alignment:
Q  170 ggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcatag 269  Q
    |||||||||||||||||||  |||| |||||||||| |||||||||| |||| |||||||||||||  ||||| ||| |||| || ||||||||| || |    
T  47028101 ggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataattcgccacgtgtaatgtgtgttgattgttgaatgg 47028200  T
Q  270 tatgt 274  Q
    |||||    
T  47028201 tatgt 47028205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 55917400 - 55917473
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgcca 241  Q
    |||| ||||||||||||||||  || | ||||||||||| | ||||||| |||| |||||||||||||| ||||    
T  55917400 tggggaattctatggtgaagtcattaaattgactttttcagagaagttatcctacattcaataataatgcgcca 55917473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 20135515 - 20135440
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    ||||||||||||||||||||  || | ||||||||||| | | ||||| |||| || ||||||||||| |||||||    
T  20135515 gggaaattctatggtgaagtcattaaattgactttttcagagcagttatcctacatccaataataatgcgccacat 20135440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 42980330 - 42980257
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttacccta-aattcaataataatgtgcca 241  Q
    ||||||||||| ||||||||  |||| || ||||||||| |||||||| ||||  || ||||||||||||||||    
T  42980330 gggaaattctacggtgaagtcattcaattaactttttcgatgaagttatcctacgatccaataataatgtgcca 42980257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 28683155 - 28683092
Alignment:
Q  172 aaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatg 236  Q
    |||||||||||||||||  || | ||||||||| ||||||||||| |||| || |||||||||||    
T  28683155 aaattctatggtgaagtccttaaattgactttt-cggtgaagttatcctacatccaataataatg 28683092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 33751500 - 33751601
Alignment:
Q  163 aataatgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgt 262  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||| ||| || || |||||||    
T  33751500 aataatgggaaattctatggtgaagtcgttcaattgactttttcggtgaagttaccctacatccaataataatgtgccacatatcacgtgtgttgattgt 33751599  T
Q  263 tg 264  Q
    ||    
T  33751600 tg 33751601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 7091194 - 7091098
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttg 264  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| | ||| || || |||||||||    
T  7091194 tgggaaattctatggtgaagtcgttcaattgactttttcggtgaagttaccctacatccaataataatgtgccacgtatcacgtgtgttgattgttg 7091098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 30778295 - 30778386
Alignment:
Q  172 aaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgtt 263  Q
    |||||||| ||||||||| || | |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  30778295 aaattctacggtgaagttctttaattgactttttcgatgaagttactctacattcaataataatgtgccacatgtcatgtgtgctgattgtt 30778386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 37080810 - 37080703
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcat 267  Q
    |||||||||||||||||||||| |||| |||||||||| | |||||||| |||| || ||||||||||| ||||  |||||||| || | ||||||||||    
T  37080810 tgggaaattctatggtgaagttattcaattgacttttttgatgaagttatcctacatccaataataatgcgccatgtgtcatgtgtgtttattgttgcat 37080711  T
Q  268 agtatgtg 275  Q
    ||||||||    
T  37080710 agtatgtg 37080703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 37259669 - 37259746
Alignment:
Q  167 atgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    ||||||||||||||||||||||  || | ||||||||||| | ||||||| |||| || ||||||||||| |||||||    
T  37259669 atgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacat 37259746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 16431955 - 16431880
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    ||||||||||||||||||||  || | ||||||||||| | ||||||| |||| || ||||||||||| |||||||    
T  16431955 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacat 16431880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 14805571 - 14805649
Alignment:
Q  166 aatgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    |||||||||||||||||||||||  || | |||| |||||| | ||||||| |||| || ||||||||||| |||||||    
T  14805571 aatgggaaattctatggtgaagtcattaaattgaatttttcagagaagttatcctacatccaataataatgcgccacat 14805649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 17692700 - 17692623
Alignment:
Q  167 atgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    |||| |||||||||||||||||  || | ||||||||||| | ||||||| |||| || ||||||||||| |||||||    
T  17692700 atggaaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacat 17692623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 6444246 - 6444140
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcat 267  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| || ||||||||| ||    
T  6444246 tgggaaattctatggtgaagtcattcaattgactttttcggtgaagttatcctacattcaataataatgcgccacatgtcatgtgtgttgattgttgaat 6444147  T
Q  268 agtatgt 274  Q
     ||||||    
T  6444146 ggtatgt 6444140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 34095937 - 34095841
Alignment:
Q  167 atgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgtt 263  Q
    ||||||||||||||||||||||  |||| |||||||||| |||||||||| |||| |||||||||||||| ||||| |||||||| || ||||||||    
T  34095937 atgggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataatgcgccacgtgtcatgtgtgttgattgtt 34095841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 47329748 - 47329642
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    |||||||| |||||||||||| |||| |||||||||| | |||||||| |||| || ||||||||||| ||||  |||||||| || | |||||||||||    
T  47329748 gggaaattttatggtgaagttattcaattgacttttttgatgaagttatcctacatccaataataatgcgccatgtgtcatgtgtgtttattgttgcata 47329649  T
Q  269 gtatgtg 275  Q
    |||||||    
T  47329648 gtatgtg 47329642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 29245356 - 29245281
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    ||||||||||||||||||||| || | ||||||||||| | ||||||| |||| || ||||||||||| |||||||    
T  29245356 gggaaattctatggtgaagttattaaattgactttttcagagaagttatcctacatccaataataatgcgccacat 29245281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 45974528 - 45974452
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    |||||||||||||||||||||  || | ||||||||||| | ||||||| |||| || ||||||||||| |||||||    
T  45974528 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacat 45974452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 49410602 - 49410512
Alignment:
Q  172 aaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgt 262  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||    
T  49410602 aaattctatggtgaagttcttcaaatgactttttcggtgaagttaccctacatccaataataatgcgccacatgtcatgtgtgctgattgt 49410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 274
Target Start/End: Complemental strand, 47036355 - 47036243
Alignment:
Q  162 aaataatgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattg 261  Q
    |||||| ||||||||||||||||||||  |||| ||||||| |||  |||||||||| || || ||||||||||| | |||||||||||| | |||||||    
T  47036355 aaataaagggaaattctatggtgaagtcattcaattgacttcttcaatgaagttaccatacatccaataataatgcgtcacatgtcatgtgttctgattg 47036256  T
Q  262 ttgcatagtatgt 274  Q
    |||||| ||||||    
T  47036255 ttgcatggtatgt 47036243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 45319607 - 45319712
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    ||||||||||||||||||||  |||| |||||||||| |||||||||| | || |||||||||||||| ||||| |||||| | || ||||||||| ||     
T  45319607 gggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcttacattcaataataatgcgccacgtgtcatttgtgttgattgttgaatt 45319706  T
Q  269 gtatgt 274  Q
    ||||||    
T  45319707 gtatgt 45319712  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 22105398 - 22105464
Alignment:
Q  175 ttctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgcca 241  Q
    ||||||| ||||||| |||| ||||||||||||||||||||| |||| || ||||||||||| ||||    
T  22105398 ttctatgatgaagttcttcaattgactttttcggtgaagttatcctacatccaataataatgcgcca 22105464  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 12983624 - 12983549
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    ||||||||||||||||||||   | | ||||||||||| | ||||||| |||| |||||||||||||| |||||||    
T  12983624 gggaaattctatggtgaagtcaataaattgactttttcagagaagttatcctacattcaataataatgcgccacat 12983549  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 45346264 - 45346339
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    ||||||||||| ||||||||  || | ||||||||||| | ||||||| |||| || ||||||||||| |||||||    
T  45346264 gggaaattctacggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacat 45346339  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 52382617 - 52382663
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagt 214  Q
    ||||||||||||||||||||||||| |  |||||| |||||||||||    
T  52382617 tgggaaattctatggtgaagttgttaaaatgacttcttcggtgaagt 52382663  T

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Target: scaffold0896 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 2030 - 1925
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    ||||||||||| ||||||||  |||| ||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||| || ||||||||| ||     
T  2030 gggaaattctacggtgaagtcattcaattgactttttcagtgaagttatcctacattcaataataatgcgccacatgtcatgtgtgttgattgttgaatg 1931  T
Q  269 gtatgt 274  Q
    ||||||    
T  1930 gtatgt 1925  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 7124334 - 7124439
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcata 268  Q
    ||||||||||| ||||||||  |||| ||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||| || ||||||||| ||     
T  7124334 gggaaattctacggtgaagtcattcaattgactttttcagtgaagttatcctacattcaataataatgcgccacatgtcatgtgtgttgattgttgaatg 7124433  T
Q  269 gtatgt 274  Q
    ||||||    
T  7124434 gtatgt 7124439  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 945177 - 945082
Alignment:
Q  172 aaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcat 267  Q
    ||||||||||||||||||  ||| |||||||||| | ||||||||| ||| |||||||||||||| | |||||||||||| |||||||||||||||    
T  945177 aaattctatggtgaagttcctcaattgacttttttgatgaagttactctacattcaataataatgcgtcacatgtcatgtgtgctgattgttgcat 945082  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 4181317 - 4181220
Alignment:
Q  178 tatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcatagtatgtg 275  Q
    |||||||||||| |||| ||||||||||   |||||||| |||| || ||||||||||| | ||  |||||||| || | ||||||||||||||||||    
T  4181317 tatggtgaagttattcaattgactttttttatgaagttatcctacatccaataataatgcgtcatgtgtcatgtgtgtttattgttgcatagtatgtg 4181220  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 12945751 - 12945699
Alignment:
Q  169 gggaaattctatggtgaagttgttcagttgactttttcggtgaagttacccta 221  Q
    ||||||||||||||||||||||   |  |||||||||||||||||| ||||||    
T  12945751 gggaaattctatggtgaagttgccaaaatgactttttcggtgaagtaacccta 12945699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 6980 - 7084
Alignment:
Q  170 ggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacatgtcatgtctgctgattgttgcatag 269  Q
    |||||||||||||||||||  |||| |||||||||| |||||||||| |||| |||||||||||||  ||||| ||| |||| || ||||||||| || |    
T  6980 ggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataattcgccacgtgtaatgtgtgttgattgttgaatgg 7079  T
Q  270 tatgt 274  Q
    |||||    
T  7080 tatgt 7084  T

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Target: scaffold0166 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 25091 - 25167
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagttaccctaaattcaataataatgtgccacat 244  Q
    |||||||||||||||||||||  || | ||||||||||| | ||||||| |||| || ||||||||||| |||||||    
T  25091 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataatgcgccacat 25167  T

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Target: scaffold0685 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 6630 - 6676
Alignment:
Q  168 tgggaaattctatggtgaagttgttcagttgactttttcggtgaagt 214  Q
    ||||||||||||||||||||||||| |  |||||| |||||||||||    
T  6630 tgggaaattctatggtgaagttgttaaaatgacttcttcggtgaagt 6676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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