View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_13 (Length: 467)
Name: NF6868A_low_13
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 3453636 - 3454082
Alignment:
| Q |
8 |
aatgagagttgcacctcttttgttttgttttcccacgtaacaactcattgttgttcttttattaaaggtnnnnnnnnngttaattgtttttcatgaaaat |
107 |
Q |
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| T |
3453636 |
aatgagagttgcacctcttttgttttgttttcccacgtaacaactcattgttgttcttttattaaagg-aaaaaaaaagttaattgtttttcaagaaaat |
3453734 |
T |
|
| Q |
108 |
atgtagaggttgaatcacaaccaacggggtagctcataaccccctcagttttgtgttggtcaccgggtcacacggttgtgatggtggttttacgccgctg |
207 |
Q |
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|||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
3453735 |
atgtagaggttgcatcaccaccaacggggtagctcatcaccccctcagttttgtgttggtcaccggttcacacggttgtgatggtggtttcatgccgctg |
3453834 |
T |
|
| Q |
208 |
tcatgacaagacatgttttgttccgtttgggttgttctctaaattttgtcagattgtacgatatgttcacgatcagttttatcctttgtactttttctga |
307 |
Q |
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| T |
3453835 |
tcatgacaagacatgttttgttccgtttgggttgttctctaaattttgtcagattgtaggatctgttcacgatcagttttatcctttgtactttttctga |
3453934 |
T |
|
| Q |
308 |
aacgtcgttgttggggtgtgctagtgtcaatctgttgaaaggcacgcacagatcttgttcgccgtttcataacgacggtgttgctgcttttatggtggca |
407 |
Q |
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| T |
3453935 |
gacgtcgttgttggg-------agtgtcaatctgttgaaaggcacgcacagttcttgttcgccgtttcataacgacggtgttgctgcttttatggtggca |
3454027 |
T |
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| Q |
408 |
acactgtgcgtttgtgtaacatatggttggtggttgtttcttgcctctgatccct |
462 |
Q |
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| T |
3454028 |
acactgtgcgtctgtgtaacatatggttggtggttgtttcttgcctctgatccct |
3454082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 308 - 451
Target Start/End: Original strand, 20806409 - 20806551
Alignment:
| Q |
308 |
aacgtcgttgttggggtgtgctagtgtcaatctgttgaaaggcacgcacagatcttgttcgccgtttcataacgacggtgttgctgcttttatggtggca |
407 |
Q |
| |
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||||||||||||| ||||||||| ||| ||||||||||| |||| ||| ||||||| | |||||||||||||| ||||| |||||| ||| ||| |
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| T |
20806409 |
aacgtcgttgttgatgtgtgctagcgtcgatctgttgaaaagcacaagcagttcttgtttgtcgtttcataacgacaatgttgttgctttcatga-ggcg |
20806507 |
T |
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| Q |
408 |
acactgtgcgtttgtgtaacatatggttggtggttgtttcttgc |
451 |
Q |
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| T |
20806508 |
acaatgtgcgtctgtgtaacatatggttggtggttgtttcttgc |
20806551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 261
Target Start/End: Original strand, 20806252 - 20806380
Alignment:
| Q |
133 |
ggggtagctcataaccccctcagttttgtgttggtcaccgggtcacacggttgtgatggtggttttacgccgctgtcatgacaagacatgttttgttccg |
232 |
Q |
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||||||||||| || |||||| | ||||||||| | || |||||||||||||| || ||||| | |||||||||| |||| ||||||||| | |
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| T |
20806252 |
ggggtagctcactactgcctcagatctgtgttggttgctggttcacacggttgtgacagtagttttgtgtcgctgtcatggcaaggatggttttgttctg |
20806351 |
T |
|
| Q |
233 |
tttgggttgttctctaaattttgtcagat |
261 |
Q |
| |
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| T |
20806352 |
tttggattgttctttaaatcttgtcagat |
20806380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 360 - 459
Target Start/End: Original strand, 13103649 - 13103748
Alignment:
| Q |
360 |
tcttgttcgccgtttcataacgacggtgttgctgcttttatggtggcaacactgtgcgtttgtgtaacatatggttggtggttgtttcttgcctctgatc |
459 |
Q |
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| T |
13103649 |
tcttgctcgccgtttgataacgacggtgttgctgattatatggtggtgacgctggccatctgtgtaacatatggttggtggttgtttcttgcctctgatc |
13103748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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