View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_131 (Length: 272)
Name: NF6868A_low_131
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_131 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 28 - 265
Target Start/End: Complemental strand, 8705652 - 8705415
Alignment:
| Q |
28 |
gggttcaaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctggataaactcatg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705652 |
gggttcaaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctggataaactcatg |
8705553 |
T |
|
| Q |
128 |
ttttgtcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtat |
227 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705552 |
ttttgtcatactcatttaaataaataaataaaaactcaaataaactcatttaaagcctttattgtaacaaaacaaaccttgtcatcttcaaaggtggtat |
8705453 |
T |
|
| Q |
228 |
catgatattcatgaatcacccagctgcttttaacacca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705452 |
catgatattcatgaatcacccagctgcttttaacacca |
8705415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 14372181 - 14372312
Alignment:
| Q |
133 |
tcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatga |
232 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
14372181 |
tcatactcatttaaataaataaataataactcaaataaactcatttaaaacctttattgtaacaaaacaaacctggt-atcttcaaaggtggtatcatga |
14372279 |
T |
|
| Q |
233 |
tattcatgaatcacccagctgcttttaacacca |
265 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
14372280 |
tattcatgaatcacccggctgcttttaacacca |
14372312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 8691210 - 8691135
Alignment:
| Q |
190 |
tgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacacca |
265 |
Q |
| |
|
||||||||||||||||| || ||| | |||||||| | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8691210 |
tgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacacca |
8691135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 8724105 - 8724029
Alignment:
| Q |
39 |
tcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctg |
115 |
Q |
| |
|
||||| ||||||| |||||||||||| | | ||||||| |||||||||| |||||| | |||| ||| |||||||| |
|
|
| T |
8724105 |
tcaaattttcaaagaatgaatccaatcatcttcaaatttcagaacagcctatcagataagaaatatatcaaatcctg |
8724029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University