View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_138 (Length: 269)
Name: NF6868A_low_138
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_138 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 37101889 - 37101626
Alignment:
| Q |
7 |
tttggtgttcaacagttattgccttttgccagaaaaatccttgtttatttttctcatattcatgcccagaacttttagtacaacaccccctttgtacact |
106 |
Q |
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| T |
37101889 |
tttggtgttcaacagttattgccttttgccagaaaaatccttgtttatttttctcatattcatgcccagaacttttagtacaacaccccccttgtacact |
37101790 |
T |
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| Q |
107 |
ttcatctcacacaactcaagatattaaatgaacaacgggagataatgtgcttgaatgtctatgacattta-tttaatgtccatggcgcttttatcttcca |
205 |
Q |
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| T |
37101789 |
ttcatctcacacagctcaagatattaaatgaacaacgggagataatgtgcttgaatgtctatgacatttattttaatgtccatggcgcttttatcttcca |
37101690 |
T |
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| Q |
206 |
cttgcatatcactaacactgctaaattgtttgagtggatattagtttgtttccctgtaacctga |
269 |
Q |
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| T |
37101689 |
cttgcatatcactaacactgctaaattgtttgagtggatattagtttgtttccctgtaacctga |
37101626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 6921555 - 6921292
Alignment:
| Q |
7 |
tttggtgttcaacagttattgccttttgccagaaaaatccttgtttatttttctcatattcatgcccagaacttttagtacaacaccccctttgtacact |
106 |
Q |
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| T |
6921555 |
tttggtgttcaacaattactgctttttgccagcaaaatccttgtttatttttctcatcttattacccagaacttttagtacaacaccccccttgtacact |
6921456 |
T |
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| Q |
107 |
ttcatctcacacaactcaagatattaaatgaacaacgggagataatgtgcttgaatgtctatgacattta-tttaatgtccatggcgcttttatcttcca |
205 |
Q |
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| T |
6921455 |
ttcatctcacccagctcaagatatcaaatgaacaagaggagataatgtgcttgaatgtctatgacatttactttaatgcccatgatgtttttatcttcca |
6921356 |
T |
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| Q |
206 |
cttgcatatcactaacactgctaaattgtttgagtggatattagtttgtttccctgtaacctga |
269 |
Q |
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| T |
6921355 |
catacatatcaccaagactgctaaattgtttgagtggatattagtttgttttcatgtaacctga |
6921292 |
T |
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